Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J5T entry

There is 1 chain in PDB entry 9J5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9J5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
38 44Right-handed alpha
Helix 4
AA4
A
51 58Right-handed alpha
Helix 5
AA5
A
68 79Right-handed alpha
Helix 6
AA6
A
80 83Right-handed 310
Helix 7
AA7
A
99 110Right-handed alpha
Helix 8
AA8
A
123 127Right-handed 310
Helix 9
AA9
A
141 151Right-handed alpha
Helix 10
AB1
A
152 154Right-handed 310
Helix 11
AB2
A
166 179Right-handed alpha
Helix 12
AB3
A
179 197Right-handed alpha
Helix 13
AB4
A
200 203Right-handed 310
Helix 14
AB5
A
204 228Right-handed alpha
Helix 15
AB6
A
237 255Right-handed alpha
Helix 16
AB7
A
259 275Right-handed alpha
Helix 17
AB8
A
281 289Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9J5T.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
61 64parallel
Strand 5
A
89 92parallel
Strand 6
A
114 121parallel
Strand 7
A
133 137anti-parallel
Strand 8
A
158 162parallel
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