Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J5U entry

There are 3 chains in PDB entry 9J5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 16	TYR 1118
B	GLN 16	TYR 1118
C	GLN 16	TYR 1118

There are 74 helices in PDB entry 9J5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	282	292	Right-handed alpha
Helix 2	AA2	A	325	331	Right-handed alpha
Helix 3	AA3	A	352	357	Right-handed 310
Helix 4	AA4	A	372	378	Right-handed 310
Helix 5	AA5	A	394	399	Right-handed 310
Helix 6	AA6	A	405	411	Right-handed alpha
Helix 7	AA7	A	487	490	Right-handed 310
Helix 8	AA8	A	601	603	Right-handed 310
Helix 9	AA9	A	604	610	Right-handed alpha
Helix 10	AB1	A	611	614	Right-handed 310
Helix 11	AB2	A	615	621	Right-handed alpha
Helix 12	AB3	A	717	723	Right-handed alpha
Helix 13	AB4	A	726	734	Right-handed alpha
Helix 14	AB5	A	735	737	Right-handed 310
Helix 15	AB6	A	738	763	Right-handed alpha
Helix 16	AB7	A	798	803	Right-handed alpha
Helix 17	AB8	A	812	816	Right-handed 310
Helix 18	AB9	A	828	835	Right-handed alpha
Helix 19	AC1	A	846	859	Right-handed alpha
Helix 20	AC2	A	877	887	Right-handed alpha
Helix 21	AC3	A	893	899	Right-handed alpha
Helix 22	AC4	A	899	912	Right-handed alpha
Helix 23	AC5	A	914	919	Right-handed alpha
Helix 24	AC6	A	928	944	Right-handed alpha
Helix 25	AC7	A	965	1012	Right-handed alpha
Helix 26	AC8	B	282	292	Right-handed alpha
Helix 27	AC9	B	325	331	Right-handed alpha
Helix 28	AD1	B	352	357	Right-handed 310
Helix 29	AD2	B	372	378	Right-handed 310
Helix 30	AD3	B	394	399	Right-handed 310
Helix 31	AD4	B	405	411	Right-handed alpha
Helix 32	AD5	B	604	610	Right-handed alpha
Helix 33	AD6	B	611	614	Right-handed 310
Helix 34	AD7	B	615	623	Right-handed 310
Helix 35	AD8	B	717	723	Right-handed alpha
Helix 36	AD9	B	726	734	Right-handed alpha
Helix 37	AE1	B	735	737	Right-handed 310
Helix 38	AE2	B	740	763	Right-handed alpha
Helix 39	AE3	B	796	803	Right-handed alpha
Helix 40	AE4	B	812	816	Right-handed 310
Helix 41	AE5	B	828	835	Right-handed alpha
Helix 42	AE6	B	846	859	Right-handed alpha
Helix 43	AE7	B	866	870	Right-handed 310
Helix 44	AE8	B	877	885	Right-handed alpha
Helix 45	AE9	B	893	898	Right-handed alpha
Helix 46	AF1	B	899	911	Right-handed alpha
Helix 47	AF2	B	914	919	Right-handed alpha
Helix 48	AF3	B	925	942	Right-handed alpha
Helix 49	AF4	B	965	1012	Right-handed alpha
Helix 50	AF5	B	1019	1023	Right-handed 310
Helix 51	AF6	C	282	292	Right-handed alpha
Helix 52	AF7	C	325	331	Right-handed alpha
Helix 53	AF8	C	352	357	Right-handed 310
Helix 54	AF9	C	372	378	Right-handed 310
Helix 55	AG1	C	394	399	Right-handed 310
Helix 56	AG2	C	405	411	Right-handed alpha
Helix 57	AG3	C	487	490	Right-handed 310
Helix 58	AG4	C	604	610	Right-handed alpha
Helix 59	AG5	C	611	614	Right-handed 310
Helix 60	AG6	C	615	620	Right-handed alpha
Helix 61	AG7	C	621	623	Right-handed 310
Helix 62	AG8	C	717	724	Right-handed alpha
Helix 63	AG9	C	726	734	Right-handed alpha
Helix 64	AH1	C	735	737	Right-handed 310
Helix 65	AH2	C	741	763	Right-handed alpha
Helix 66	AH3	C	796	806	Right-handed alpha
Helix 67	AH4	C	813	817	Right-handed 310
Helix 68	AH5	C	828	835	Right-handed alpha
Helix 69	AH6	C	846	859	Right-handed alpha
Helix 70	AH7	C	877	888	Right-handed alpha
Helix 71	AH8	C	893	899	Right-handed alpha
Helix 72	AH9	C	899	919	Right-handed alpha
Helix 73	AI1	C	925	944	Right-handed alpha
Helix 74	AI2	C	973	1012	Right-handed alpha

There are 47 sheets in PDB entry 9J5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	65	73	anti-parallel
Strand 3	A	251	257	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	183	192	anti-parallel
Strand 6	A	195	203	anti-parallel
Strand 7	A	214	224	anti-parallel
Strand 8	A	37	41	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	65	73	anti-parallel
Strand 3	A	79	80	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	59	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	273	278	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	118	123	anti-parallel
Strand 5	A	127	145	anti-parallel
Strand 6	A	150	169	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	303	first strand
Strand 2	A	580	584	anti-parallel
Strand 3	A	594	598	anti-parallel
Strand 4	A	635	638	anti-parallel
Strand 5	A	629	631	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	523	528	parallel
Strand 3	A	531	539	anti-parallel
Strand 4	A	569	573	anti-parallel
Strand 5	A	558	562	anti-parallel
Strand 6	A	550	552	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	383	392	anti-parallel
Strand 3	A	492	501	anti-parallel
Strand 4	A	420	426	anti-parallel
Strand 5	A	363	369	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	509	510	parallel
Strand 3	A	380	381	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	477	479	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	473	474	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	672	676	parallel
Strand 3	A	657	661	anti-parallel
Strand 4	A	651	654	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	C	767	768	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	708	first strand
Strand 2	A	1039	1058	anti-parallel
Strand 3	A	1027	1036	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	708	first strand
Strand 2	A	1039	1058	anti-parallel
Strand 3	A	1074	1077	anti-parallel
Strand 4	A	1083	1086	anti-parallel
Strand 5	A	1089	1094	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	716	first strand
Strand 2	A	838	841	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	767	768	first strand
Strand 2	B	681	682	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1100	1105	first strand
Strand 2	A	1066	1070	anti-parallel
Strand 3	A	1060	1063	anti-parallel
Strand 4	A	1112	1114	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	66	71	anti-parallel
Strand 3	B	251	257	anti-parallel
Strand 4	B	92	98	anti-parallel
Strand 5	B	183	192	anti-parallel
Strand 6	B	195	203	anti-parallel
Strand 7	B	216	224	anti-parallel
Strand 8	B	40	41	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	273	278	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	103	109	anti-parallel
Strand 4	B	118	123	anti-parallel
Strand 5	B	127	146	anti-parallel
Strand 6	B	149	169	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	303	first strand
Strand 2	B	580	584	anti-parallel
Strand 3	B	594	598	anti-parallel
Strand 4	B	635	638	anti-parallel
Strand 5	B	629	631	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	524	528	parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	569	573	anti-parallel
Strand 5	B	558	562	anti-parallel
Strand 6	B	550	552	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	383	392	anti-parallel
Strand 3	B	492	501	anti-parallel
Strand 4	B	420	426	anti-parallel
Strand 5	B	365	369	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	509	510	parallel
Strand 3	B	380	381	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	477	479	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	473	474	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	672	676	parallel
Strand 3	B	657	661	anti-parallel
Strand 4	B	651	654	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	708	first strand
Strand 2	B	1039	1058	anti-parallel
Strand 3	B	1027	1036	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	708	first strand
Strand 2	B	1039	1058	anti-parallel
Strand 3	B	1074	1077	anti-parallel
Strand 4	B	1082	1085	anti-parallel
Strand 5	B	1093	1094	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	838	841	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	767	768	first strand
Strand 2	C	681	682	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1100	1105	first strand
Strand 2	B	1066	1070	anti-parallel
Strand 3	B	1061	1063	anti-parallel
Strand 4	B	1113	1114	parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	65	71	anti-parallel
Strand 3	C	251	257	anti-parallel
Strand 4	C	92	98	anti-parallel
Strand 5	C	183	192	anti-parallel
Strand 6	C	195	203	anti-parallel
Strand 7	C	216	224	anti-parallel
Strand 8	C	40	41	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	59	first strand
Strand 2	C	259	267	anti-parallel
Strand 3	C	273	278	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	78	79	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	118	123	anti-parallel
Strand 5	C	127	146	anti-parallel
Strand 6	C	149	169	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	302	first strand
Strand 2	C	580	584	anti-parallel
Strand 3	C	594	598	anti-parallel
Strand 4	C	635	638	anti-parallel
Strand 5	C	629	631	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	523	528	parallel
Strand 3	C	531	539	anti-parallel
Strand 4	C	569	573	anti-parallel
Strand 5	C	558	562	anti-parallel
Strand 6	C	550	552	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	383	392	anti-parallel
Strand 3	C	492	501	anti-parallel
Strand 4	C	420	426	anti-parallel
Strand 5	C	363	369	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	509	510	parallel
Strand 3	C	380	381	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	439	first strand
Strand 2	C	477	479	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	459	first strand
Strand 2	C	473	474	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	647	first strand
Strand 2	C	672	677	parallel
Strand 3	C	657	661	anti-parallel
Strand 4	C	651	654	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	708	first strand
Strand 2	C	1039	1057	anti-parallel
Strand 3	C	1027	1036	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	708	first strand
Strand 2	C	1039	1057	anti-parallel
Strand 3	C	1074	1077	anti-parallel
Strand 4	C	1082	1086	anti-parallel
Strand 5	C	1089	1093	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	716	first strand
Strand 2	C	838	841	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1100	1105	first strand
Strand 2	C	1066	1070	anti-parallel
Strand 3	C	1060	1063	anti-parallel
Strand 4	C	1112	1114	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5U