Analysis of interatomic Contacts of Structural Units in PDB entry:
9J60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J60 entry

There are 2 chains in PDB entry 9J60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 95	ASP 802
B	ARG 87	ASP 803

There are 53 helices in PDB entry 9J60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	137	Right-handed alpha
Helix 2	AA2	A	241	245	Right-handed 310
Helix 3	AA3	A	251	256	Right-handed alpha
Helix 4	AA4	A	257	262	Right-handed 310
Helix 5	AA5	A	268	272	Right-handed 310
Helix 6	AA6	A	273	274	Right-handed 310
Helix 7	AA7	A	275	283	Right-handed alpha
Helix 8	AA8	A	322	325	Right-handed 310
Helix 9	AA9	A	329	332	Right-handed 310
Helix 10	AB1	A	333	349	Right-handed alpha
Helix 11	AB2	A	375	380	Right-handed alpha
Helix 12	AB3	A	406	425	Right-handed alpha
Helix 13	AB4	A	471	477	Right-handed alpha
Helix 14	AB5	A	479	483	Right-handed 310
Helix 15	AB6	A	511	524	Right-handed alpha
Helix 16	AB7	A	528	537	Right-handed alpha
Helix 17	AB8	A	539	544	Right-handed alpha
Helix 18	AB9	A	549	551	Right-handed 310
Helix 19	AC1	A	564	569	Right-handed alpha
Helix 20	AC2	A	576	580	Right-handed 310
Helix 21	AC3	A	603	624	Right-handed alpha
Helix 22	AC4	A	633	637	Right-handed 310
Helix 23	AC5	A	651	655	Right-handed 310
Helix 24	AC6	A	657	662	Right-handed alpha
Helix 25	AC7	A	664	681	Right-handed alpha
Helix 26	AC8	A	770	777	Right-handed alpha
Helix 27	AC9	A	778	783	Right-handed alpha
Helix 28	AD1	B	131	136	Right-handed alpha
Helix 29	AD2	B	241	245	Right-handed 310
Helix 30	AD3	B	251	257	Right-handed alpha
Helix 31	AD4	B	258	262	Right-handed 310
Helix 32	AD5	B	268	274	Right-handed alpha
Helix 33	AD6	B	275	283	Right-handed alpha
Helix 34	AD7	B	300	305	Right-handed alpha
Helix 35	AD8	B	321	325	Right-handed 310
Helix 36	AD9	B	329	332	Right-handed 310
Helix 37	AE1	B	333	350	Right-handed alpha
Helix 38	AE2	B	374	384	Right-handed alpha
Helix 39	AE3	B	406	423	Right-handed alpha
Helix 40	AE4	B	468	477	Right-handed alpha
Helix 41	AE5	B	511	524	Right-handed alpha
Helix 42	AE6	B	528	537	Right-handed alpha
Helix 43	AE7	B	539	544	Right-handed alpha
Helix 44	AE8	B	549	551	Right-handed 310
Helix 45	AE9	B	566	570	Right-handed 310
Helix 46	AF1	B	603	624	Right-handed alpha
Helix 47	AF2	B	633	637	Right-handed 310
Helix 48	AF3	B	651	655	Right-handed 310
Helix 49	AF4	B	659	664	Right-handed alpha
Helix 50	AF5	B	664	681	Right-handed alpha
Helix 51	AF6	B	682	685	Right-handed 310
Helix 52	AF7	B	770	777	Right-handed alpha
Helix 53	AF8	B	778	783	Right-handed alpha

There are 15 sheets in PDB entry 9J60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	113	118	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	169	172	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	286	289	parallel
Strand 3	A	353	358	parallel
Strand 4	A	428	431	parallel
Strand 5	A	484	487	parallel
Strand 6	A	508	510	parallel
Strand 7	A	553	555	parallel
Strand 8	A	627	631	parallel
Strand 9	A	247	250	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	316	320	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	698	first strand
Strand 2	A	713	719	anti-parallel
Strand 3	A	725	731	anti-parallel
Strand 4	A	793	800	anti-parallel
Strand 5	A	748	754	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	740	first strand
Strand 2	A	786	789	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	105	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	152	153	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	122	130	anti-parallel
Strand 3	B	169	176	anti-parallel
Strand 4	B	220	222	anti-parallel
Strand 5	B	200	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	184	185	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	286	289	parallel
Strand 3	B	353	358	parallel
Strand 4	B	428	431	parallel
Strand 5	B	484	487	parallel
Strand 6	B	508	510	parallel
Strand 7	B	553	555	parallel
Strand 8	B	627	631	parallel
Strand 9	B	247	250	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	698	first strand
Strand 2	B	713	720	anti-parallel
Strand 3	B	724	731	anti-parallel
Strand 4	B	793	801	anti-parallel
Strand 5	B	747	754	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	740	first strand
Strand 2	B	786	789	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J60

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J60