Analysis of interatomic Contacts of Structural Units in PDB entry:
9J62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J62 entry

There are 2 chains in PDB entry 9J62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
B
 THR 321CYS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9J62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
57 79Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
103 108Right-handed 310
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
147 155Right-handed alpha
Helix 8
AA8
A
157 172Right-handed alpha
Helix 9
AA9
A
173 175Right-handed 310
Helix 10
AB1
A
176 194Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
220 231Right-handed alpha
Helix 14
AB5
A
233 252Right-handed alpha
Helix 15
AB6
A
275 279Right-handed 310
Helix 16
AB7
A
293 300Right-handed alpha
Helix 17
AB8
A
303 318Right-handed alpha
Helix 18
AB9
A
324 331Right-handed alpha
Helix 19
AC1
A
365 385Right-handed alpha
Helix 20
AC2
A
389 393Right-handed 310
Helix 21
AC3
A
399 413Right-handed alpha
Helix 22
AC4
A
414 421Right-handed alpha
Helix 23
AC5
A
431 444Right-handed alpha
Helix 24
AC6
A
448 466Right-handed alpha
Helix 25
AC7
A
469 471Right-handed 310
Helix 26
AC8
A
472 484Right-handed alpha
Helix 27
AC9
A
498 502Right-handed 310
Helix 28
AD1
A
503 508Right-handed alpha
Helix 29
AD2
A
513 533Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
547 559Right-handed alpha
Helix 32
AD5
A
565 575Right-handed alpha
Helix 33
AD6
A
581 588Right-handed alpha
Helix 34
AD7
A
588 597Right-handed alpha
Helix 35
AD8
B
325 330Right-handed alpha
Helix 36
AD9
B
354 359Right-handed alpha
Helix 37
AE1
B
395 399Right-handed 310
Helix 38
AE2
B
406 411Right-handed alpha
Helix 39
AE3
B
487 490Right-handed 310
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There are 6 sheets in PDB entry 9J62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 346first strand
Strand 2
B
383 392anti-parallel
Strand 3
B
492 501anti-parallel
Strand 4
B
420 426anti-parallel
Strand 5
B
365 369anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 439first strand
Strand 2
B
477 479anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 459first strand
Strand 2
B
473 474anti-parallel
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