Analysis of interatomic Contacts of Structural Units in PDB entry:
9J63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J63 entry

There are 5 chains in PDB entry 9J63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 646
C	MET 17	CYS 112
B	MET 1	PRO 97
E	VAL 24	LYS 105
D	MET 1	GLU 333

There are 74 helices in PDB entry 9J63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	26	Right-handed alpha
Helix 2	AA2	A	31	47	Right-handed alpha
Helix 3	AA3	A	53	79	Right-handed alpha
Helix 4	AA4	A	82	105	Right-handed alpha
Helix 5	AA5	A	105	112	Right-handed alpha
Helix 6	AA6	A	112	117	Right-handed alpha
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	138	151	Right-handed alpha
Helix 9	AA9	A	155	172	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	200	207	Right-handed alpha
Helix 12	AB3	A	207	230	Right-handed alpha
Helix 13	AB4	A	231	254	Right-handed alpha
Helix 14	AB5	A	255	257	Right-handed 310
Helix 15	AB6	A	258	271	Right-handed alpha
Helix 16	AB7	A	274	286	Right-handed alpha
Helix 17	AB8	A	292	304	Right-handed alpha
Helix 18	AB9	A	306	327	Right-handed alpha
Helix 19	AC1	A	334	358	Right-handed alpha
Helix 20	AC2	A	361	377	Right-handed alpha
Helix 21	AC3	A	385	400	Right-handed alpha
Helix 22	AC4	A	407	425	Right-handed alpha
Helix 23	AC5	A	427	445	Right-handed alpha
Helix 24	AC6	A	450	470	Right-handed alpha
Helix 25	AC7	A	470	497	Right-handed alpha
Helix 26	AC8	A	530	548	Right-handed alpha
Helix 27	AC9	A	557	559	Right-handed 310
Helix 28	AD1	A	579	587	Right-handed alpha
Helix 29	AD2	A	595	604	Right-handed alpha
Helix 30	AD3	A	606	620	Right-handed alpha
Helix 31	AD4	C	33	37	Right-handed alpha
Helix 32	AD5	C	39	47	Right-handed alpha
Helix 33	AD6	C	66	84	Right-handed alpha
Helix 34	AD7	C	96	111	Right-handed alpha
Helix 35	AD8	B	23	36	Right-handed alpha
Helix 36	AD9	B	56	61	Right-handed alpha
Helix 37	AE1	E	81	91	Right-handed alpha
Helix 38	AE2	D	9	26	Right-handed alpha
Helix 39	AE3	D	31	47	Right-handed alpha
Helix 40	AE4	D	53	79	Right-handed alpha
Helix 41	AE5	D	82	105	Right-handed alpha
Helix 42	AE6	D	105	112	Right-handed alpha
Helix 43	AE7	D	112	117	Right-handed alpha
Helix 44	AE8	D	119	126	Right-handed alpha
Helix 45	AE9	D	138	151	Right-handed alpha
Helix 46	AF1	D	155	172	Right-handed alpha
Helix 47	AF2	D	177	192	Right-handed alpha
Helix 48	AF3	D	200	207	Right-handed alpha
Helix 49	AF4	D	207	230	Right-handed alpha
Helix 50	AF5	D	231	254	Right-handed alpha
Helix 51	AF6	D	255	257	Right-handed 310
Helix 52	AF7	D	258	271	Right-handed alpha
Helix 53	AF8	D	274	286	Right-handed alpha
Helix 54	AF9	D	292	304	Right-handed alpha
Helix 55	AG1	D	306	327	Right-handed alpha
Helix 56	AG2	D	334	358	Right-handed alpha
Helix 57	AG3	D	361	377	Right-handed alpha
Helix 58	AG4	D	385	400	Right-handed alpha
Helix 59	AG5	D	407	423	Right-handed alpha
Helix 60	AG6	D	427	445	Right-handed alpha
Helix 61	AG7	D	450	470	Right-handed alpha
Helix 62	AG8	D	470	497	Right-handed alpha
Helix 63	AG9	D	530	548	Right-handed alpha
Helix 64	AH1	D	557	559	Right-handed 310
Helix 65	AH2	D	579	587	Right-handed alpha
Helix 66	AH3	D	596	604	Right-handed alpha
Helix 67	AH4	D	606	620	Right-handed alpha
Helix 68	AH5	F	33	39	Right-handed alpha
Helix 69	AH6	F	39	47	Right-handed alpha
Helix 70	AH7	F	66	84	Right-handed alpha
Helix 71	AH8	F	96	111	Right-handed alpha
Helix 72	AH9	G	23	35	Right-handed alpha
Helix 73	AI1	G	56	61	Right-handed alpha
Helix 74	AI2	H	80	91	Right-handed alpha

There are 10 sheets in PDB entry 9J63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	513	first strand
Strand 2	E	26	34	parallel
Strand 3	A	552	555	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	513	first strand
Strand 2	E	26	34	parallel
Strand 3	A	561	566	anti-parallel
Strand 4	A	573	578	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	594	first strand
Strand 2	A	638	640	anti-parallel
Strand 3	A	623	625	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	18	22	parallel
Strand 3	C	28	32	anti-parallel
Strand 4	B	12	19	parallel
Strand 5	B	2	9	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	43	46	anti-parallel
Strand 3	B	76	78	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	70	73	anti-parallel
Strand 3	E	103	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	513	first strand
Strand 2	H	26	34	parallel
Strand 3	D	552	555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	513	first strand
Strand 2	H	26	34	parallel
Strand 3	D	561	566	anti-parallel
Strand 4	D	573	578	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	593	595	first strand
Strand 2	D	637	640	anti-parallel
Strand 3	D	623	625	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	18	22	parallel
Strand 3	F	28	32	anti-parallel
Strand 4	G	12	19	parallel
Strand 5	G	2	9	anti-parallel
Strand 6	G	73	78	parallel
Strand 7	G	43	46	anti-parallel
Strand 8	G	49	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J63

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J63