Analysis of interatomic Contacts of Structural Units in PDB entry:
9J64

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J64 entry

There are 6 chains in PDB entry 9J64 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 57	SER 646
D	MET 1	SER 646
E	VAL 24	LYS 105
F	MET 17	CYS 112
G	MET 1	PRO 97
H	VAL 24	VAL 24

There are 87 helices in PDB entry 9J64. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	79	Right-handed alpha
Helix 2	AA2	A	82	105	Right-handed alpha
Helix 3	AA3	A	138	151	Right-handed alpha
Helix 4	AA4	A	155	172	Right-handed alpha
Helix 5	AA5	A	177	192	Right-handed alpha
Helix 6	AA6	A	200	229	Right-handed alpha
Helix 7	AA7	A	231	254	Right-handed alpha
Helix 8	AA8	A	255	257	Right-handed 310
Helix 9	AA9	A	258	271	Right-handed alpha
Helix 10	AB1	A	277	289	Right-handed alpha
Helix 11	AB2	A	290	302	Right-handed alpha
Helix 12	AB3	A	307	329	Right-handed alpha
Helix 13	AB4	A	334	357	Right-handed alpha
Helix 14	AB5	A	361	378	Right-handed alpha
Helix 15	AB6	A	385	400	Right-handed alpha
Helix 16	AB7	A	407	425	Right-handed alpha
Helix 17	AB8	A	427	446	Right-handed alpha
Helix 18	AB9	A	450	466	Right-handed alpha
Helix 19	AC1	A	467	469	Right-handed 310
Helix 20	AC2	A	470	497	Right-handed alpha
Helix 21	AC3	A	530	548	Right-handed alpha
Helix 22	AC4	A	579	586	Right-handed alpha
Helix 23	AC5	A	587	589	Right-handed 310
Helix 24	AC6	A	596	604	Right-handed alpha
Helix 25	AC7	A	606	621	Right-handed alpha
Helix 26	AC8	D	9	25	Right-handed alpha
Helix 27	AC9	D	31	47	Right-handed alpha
Helix 28	AD1	D	54	78	Right-handed alpha
Helix 29	AD2	D	82	105	Right-handed alpha
Helix 30	AD3	D	106	112	Right-handed alpha
Helix 31	AD4	D	119	126	Right-handed alpha
Helix 32	AD5	D	138	146	Right-handed alpha
Helix 33	AD6	D	155	171	Right-handed alpha
Helix 34	AD7	D	179	192	Right-handed alpha
Helix 35	AD8	D	200	207	Right-handed alpha
Helix 36	AD9	D	207	229	Right-handed alpha
Helix 37	AE1	D	231	254	Right-handed alpha
Helix 38	AE2	D	255	257	Right-handed 310
Helix 39	AE3	D	258	271	Right-handed alpha
Helix 40	AE4	D	274	288	Right-handed alpha
Helix 41	AE5	D	291	302	Right-handed alpha
Helix 42	AE6	D	303	306	Right-handed 310
Helix 43	AE7	D	307	326	Right-handed alpha
Helix 44	AE8	D	334	357	Right-handed alpha
Helix 45	AE9	D	361	373	Right-handed alpha
Helix 46	AF1	D	385	390	Right-handed alpha
Helix 47	AF2	D	390	398	Right-handed alpha
Helix 48	AF3	D	407	423	Right-handed alpha
Helix 49	AF4	D	428	446	Right-handed alpha
Helix 50	AF5	D	450	465	Right-handed alpha
Helix 51	AF6	D	473	497	Right-handed alpha
Helix 52	AF7	D	534	548	Right-handed alpha
Helix 53	AF8	D	579	587	Right-handed alpha
Helix 54	AF9	D	596	604	Right-handed alpha
Helix 55	AG1	D	606	621	Right-handed alpha
Helix 56	AG2	E	81	91	Right-handed alpha
Helix 57	AG3	F	32	38	Right-handed alpha
Helix 58	AG4	F	40	47	Right-handed alpha
Helix 59	AG5	F	67	83	Right-handed alpha
Helix 60	AG6	F	101	110	Right-handed alpha
Helix 61	AG7	G	23	36	Right-handed alpha
Helix 62	AG8	H	80	91	Right-handed alpha
Helix 63	AG9	I	156	165	Right-handed alpha
Helix 64	AH1	I	166	176	Right-handed alpha
Helix 65	AH2	I	189	198	Right-handed alpha
Helix 66	AH3	I	199	209	Right-handed alpha
Helix 67	AH4	I	221	230	Right-handed alpha
Helix 68	AH5	I	231	240	Right-handed alpha
Helix 69	AH6	I	245	262	Right-handed alpha
Helix 70	AH7	I	268	284	Right-handed alpha
Helix 71	AH8	I	310	317	Right-handed alpha
Helix 72	AH9	I	320	337	Right-handed alpha
Helix 73	AI1	I	343	357	Right-handed alpha
Helix 74	AI2	I	359	377	Right-handed alpha
Helix 75	AI3	I	381	398	Right-handed alpha
Helix 76	AI4	I	405	429	Right-handed alpha
Helix 77	AI5	I	433	457	Right-handed alpha
Helix 78	AI6	I	460	477	Right-handed alpha
Helix 79	AI7	I	486	493	Right-handed alpha
Helix 80	AI8	I	511	522	Right-handed alpha
Helix 81	AI9	I	535	540	Right-handed alpha
Helix 82	AJ1	I	548	561	Right-handed alpha
Helix 83	AJ2	I	575	580	Right-handed alpha
Helix 84	AJ3	I	582	592	Right-handed alpha
Helix 85	AJ4	I	597	602	Right-handed alpha
Helix 86	AJ5	I	602	609	Right-handed alpha
Helix 87	AJ6	I	620	627	Right-handed alpha

There are 7 sheets in PDB entry 9J64. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	512	first strand
Strand 2	E	27	34	parallel
Strand 3	A	552	555	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	566	first strand
Strand 2	A	573	578	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	595	first strand
Strand 2	A	637	640	anti-parallel
Strand 3	A	623	625	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	562	first strand
Strand 2	D	577	578	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	595	first strand
Strand 2	D	637	640	anti-parallel
Strand 3	D	623	625	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	78	80	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	19	22	parallel
Strand 3	F	28	31	anti-parallel
Strand 4	G	12	19	parallel
Strand 5	G	2	9	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J64

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J64