Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J6C entry

There are 2 chains in PDB entry 9J6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 24PRO 310
B
 ILE 24PRO 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9J6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 47Right-handed alpha
Helix 2
AA2
A
60 66Right-handed alpha
Helix 3
AA3
A
73 80Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
A
101 106Right-handed alpha
Helix 6
AA6
A
117 131Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
159 166Right-handed alpha
Helix 9
AA9
A
166 174Right-handed alpha
Helix 10
AB1
A
185 214Right-handed alpha
Helix 11
AB2
A
218 223Right-handed alpha
Helix 12
AB3
A
225 247Right-handed alpha
Helix 13
AB4
A
255 273Right-handed alpha
Helix 14
AB5
A
277 293Right-handed alpha
Helix 15
AB6
A
299 302Right-handed 310
Helix 16
AB7
A
303 309Right-handed alpha
Helix 17
AB8
B
33 47Right-handed alpha
Helix 18
AB9
B
60 66Right-handed alpha
Helix 19
AC1
B
73 80Right-handed alpha
Helix 20
AC2
B
90 99Right-handed alpha
Helix 21
AC3
B
101 106Right-handed alpha
Helix 22
AC4
B
117 131Right-handed alpha
Helix 23
AC5
B
143 147Right-handed 310
Helix 24
AC6
B
159 166Right-handed alpha
Helix 25
AC7
B
166 174Right-handed alpha
Helix 26
AC8
B
185 214Right-handed alpha
Helix 27
AC9
B
218 223Right-handed alpha
Helix 28
AD1
B
225 247Right-handed alpha
Helix 29
AD2
B
255 273Right-handed alpha
Helix 30
AD3
B
277 293Right-handed alpha
Helix 31
AD4
B
299 302Right-handed 310
Helix 32
AD5
B
303 309Right-handed alpha
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There are 2 sheets in PDB entry 9J6C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
50 53parallel
Strand 3
A
27 30parallel
Strand 4
A
83 86parallel
Strand 5
A
109 112parallel
Strand 6
A
134 140parallel
Strand 7
A
154 158anti-parallel
Strand 8
A
178 179parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
50 53parallel
Strand 3
B
27 30parallel
Strand 4
B
83 86parallel
Strand 5
B
109 112parallel
Strand 6
B
134 140parallel
Strand 7
B
153 158anti-parallel
Strand 8
B
176 179parallel
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