Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J6J entry

There is 1 chain in PDB entry 9J6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 104HIS 1323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9J6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 116Right-handed alpha
Helix 2
AA2
A
121 129Right-handed alpha
Helix 3
AA3
A
433 438Right-handed 310
Helix 4
AA4
A
524 528Right-handed 310
Helix 5
AA5
A
1227 1243Right-handed alpha
Helix 6
AA6
A
1252 1257Right-handed alpha
Helix 7
AA7
A
1274 1279Right-handed alpha
Helix 8
AA8
A
1280 1283Right-handed 310
Helix 9
AA9
A
1284 1291Right-handed alpha
Helix 10
AB1
A
1308 1321Right-handed alpha
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There are 22 sheets in PDB entry 9J6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1187 1192first strand
Strand 2
A
1208 1215anti-parallel
Strand 3
A
1220 1225anti-parallel
Strand 4
A
187 193anti-parallel
Strand 5
A
1271 1273parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
213 217anti-parallel
Strand 3
A
221 227anti-parallel
Strand 4
A
232 239anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 250first strand
Strand 2
A
259 264anti-parallel
Strand 3
A
268 276anti-parallel
Strand 4
A
281 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
338 341anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
371 377anti-parallel
Strand 4
A
393 394anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 404first strand
Strand 2
A
412 415anti-parallel
Strand 3
A
420 424anti-parallel
Strand 4
A
427 431anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
453 458anti-parallel
Strand 3
A
462 471anti-parallel
Strand 4
A
479 490anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
504 508anti-parallel
Strand 3
A
514 519anti-parallel
Strand 4
A
530 536anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 548first strand
Strand 2
A
557 562anti-parallel
Strand 3
A
569 575anti-parallel
Strand 4
A
893 899anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 595first strand
Strand 2
A
608 612anti-parallel
Strand 3
A
615 618anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 642first strand
Strand 2
A
651 655anti-parallel
Strand 3
A
658 662anti-parallel
Strand 4
A
669 674anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 686first strand
Strand 2
A
690 695anti-parallel
Strand 3
A
698 705anti-parallel
Strand 4
A
708 716anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 725first strand
Strand 2
A
740 743anti-parallel
Strand 3
A
748 752anti-parallel
Strand 4
A
759 764anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
771 778first strand
Strand 2
A
783 789anti-parallel
Strand 3
A
794 799anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
820 823first strand
Strand 2
A
832 835anti-parallel
Strand 3
A
840 842anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
861 865first strand
Strand 2
A
873 877anti-parallel
Strand 3
A
882 884anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
903 910first strand
Strand 2
A
915 924anti-parallel
Strand 3
A
969 978anti-parallel
Strand 4
A
984 989anti-parallel
Strand 5
A
945 948parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 1002first strand
Strand 2
A
1011 1018anti-parallel
Strand 3
A
1031 1036anti-parallel
Strand 4
A
1041 1045anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1058first strand
Strand 2
A
1063 1066anti-parallel
Strand 3
A
1071 1076anti-parallel
Strand 4
A
1082 1088anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1094 1100first strand
Strand 2
A
1103 1108anti-parallel
Strand 3
A
1113 1119anti-parallel
Strand 4
A
1124 1130anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1137 1142first strand
Strand 2
A
1147 1152anti-parallel
Strand 3
A
1156 1162anti-parallel
Strand 4
A
1175 1182anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1259 1261first strand
Strand 2
A
1264 1266anti-parallel
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