Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J6M entry

There are 2 chains in PDB entry 9J6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 45	ARG 625
B	PRO 46	GLY 626

There are 23 helices in PDB entry 9J6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	64	Right-handed 310
Helix 2	AA2	A	141	145	Right-handed 310
Helix 3	AA3	A	185	188	Right-handed 310
Helix 4	AA4	A	202	206	Right-handed 310
Helix 5	AA5	A	257	259	Right-handed 310
Helix 6	AA6	A	379	393	Right-handed alpha
Helix 7	AA7	A	406	417	Right-handed alpha
Helix 8	AA8	A	432	449	Right-handed alpha
Helix 9	AA9	A	470	482	Right-handed alpha
Helix 10	AB1	A	556	574	Right-handed alpha
Helix 11	AB2	A	609	625	Right-handed alpha
Helix 12	AB3	B	60	64	Right-handed 310
Helix 13	AB4	B	141	145	Right-handed 310
Helix 14	AB5	B	185	188	Right-handed 310
Helix 15	AB6	B	202	206	Right-handed 310
Helix 16	AB7	B	257	259	Right-handed 310
Helix 17	AB8	B	379	393	Right-handed alpha
Helix 18	AB9	B	406	417	Right-handed alpha
Helix 19	AC1	B	432	449	Right-handed alpha
Helix 20	AC2	B	470	482	Right-handed alpha
Helix 21	AC3	B	556	574	Right-handed alpha
Helix 22	AC4	B	574	579	Right-handed alpha
Helix 23	AC5	B	609	625	Right-handed alpha

There are 21 sheets in PDB entry 9J6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	148	153	anti-parallel
Strand 4	A	180	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	88	96	anti-parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	193	200	anti-parallel
Strand 5	A	159	164	anti-parallel
Strand 6	A	167	168	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	88	96	anti-parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	193	200	anti-parallel
Strand 5	A	159	164	anti-parallel
Strand 6	A	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	228	229	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	256	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	298	301	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	293	first strand
Strand 2	A	275	282	anti-parallel
Strand 3	A	316	324	anti-parallel
Strand 4	A	327	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	293	first strand
Strand 2	A	275	282	anti-parallel
Strand 3	A	316	324	anti-parallel
Strand 4	A	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	346	first strand
Strand 2	A	349	354	anti-parallel
Strand 3	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	488	first strand
Strand 2	A	456	460	parallel
Strand 3	A	419	423	parallel
Strand 4	A	397	400	parallel
Strand 5	A	361	366	parallel
Strand 6	A	580	586	parallel
Strand 7	A	525	532	parallel
Strand 8	A	506	511	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	552	553	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	180	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	88	96	anti-parallel
Strand 3	B	130	138	anti-parallel
Strand 4	B	193	200	anti-parallel
Strand 5	B	159	164	anti-parallel
Strand 6	B	167	168	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	88	96	anti-parallel
Strand 3	B	130	138	anti-parallel
Strand 4	B	193	200	anti-parallel
Strand 5	B	159	164	anti-parallel
Strand 6	B	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	228	229	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	256	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	298	301	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	293	first strand
Strand 2	B	275	282	anti-parallel
Strand 3	B	316	323	anti-parallel
Strand 4	B	332	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	346	first strand
Strand 2	B	349	354	anti-parallel
Strand 3	B	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	488	first strand
Strand 2	B	456	460	parallel
Strand 3	B	419	423	parallel
Strand 4	B	397	400	parallel
Strand 5	B	361	366	parallel
Strand 6	B	580	586	parallel
Strand 7	B	525	532	parallel
Strand 8	B	506	511	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	535	first strand
Strand 2	B	552	553	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6M