Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J6X entry

There are 3 chains in PDB entry 9J6X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 86	ASP 803
B	GLU 86	ASP 803
C	ALA 36	LEU 799

There are 74 helices in PDB entry 9J6X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	131	138	Right-handed alpha
Helix 2	AA2	A	180	183	Right-handed 310
Helix 3	AA3	A	210	214	Right-handed 310
Helix 4	AA4	A	241	245	Right-handed 310
Helix 5	AA5	A	251	257	Right-handed alpha
Helix 6	AA6	A	268	282	Right-handed alpha
Helix 7	AA7	A	329	332	Right-handed 310
Helix 8	AA8	A	333	350	Right-handed alpha
Helix 9	AA9	A	379	384	Right-handed alpha
Helix 10	AB1	A	406	424	Right-handed alpha
Helix 11	AB2	A	433	439	Right-handed 310
Helix 12	AB3	A	441	445	Right-handed 310
Helix 13	AB4	A	468	477	Right-handed alpha
Helix 14	AB5	A	479	483	Right-handed 310
Helix 15	AB6	A	512	524	Right-handed alpha
Helix 16	AB7	A	528	537	Right-handed alpha
Helix 17	AB8	A	539	544	Right-handed alpha
Helix 18	AB9	A	549	551	Right-handed 310
Helix 19	AC1	A	566	570	Right-handed 310
Helix 20	AC2	A	603	623	Right-handed alpha
Helix 21	AC3	A	651	655	Right-handed 310
Helix 22	AC4	A	664	681	Right-handed alpha
Helix 23	AC5	A	770	777	Right-handed alpha
Helix 24	AC6	A	778	783	Right-handed alpha
Helix 25	AC7	B	131	137	Right-handed alpha
Helix 26	AC8	B	180	183	Right-handed 310
Helix 27	AC9	B	241	245	Right-handed 310
Helix 28	AD1	B	251	257	Right-handed alpha
Helix 29	AD2	B	258	262	Right-handed 310
Helix 30	AD3	B	268	274	Right-handed alpha
Helix 31	AD4	B	275	283	Right-handed alpha
Helix 32	AD5	B	322	325	Right-handed 310
Helix 33	AD6	B	329	332	Right-handed 310
Helix 34	AD7	B	333	350	Right-handed alpha
Helix 35	AD8	B	375	384	Right-handed alpha
Helix 36	AD9	B	406	425	Right-handed alpha
Helix 37	AE1	B	433	439	Right-handed 310
Helix 38	AE2	B	441	445	Right-handed 310
Helix 39	AE3	B	468	476	Right-handed alpha
Helix 40	AE4	B	479	483	Right-handed 310
Helix 41	AE5	B	511	524	Right-handed alpha
Helix 42	AE6	B	528	537	Right-handed alpha
Helix 43	AE7	B	539	544	Right-handed alpha
Helix 44	AE8	B	549	551	Right-handed 310
Helix 45	AE9	B	564	569	Right-handed alpha
Helix 46	AF1	B	576	580	Right-handed 310
Helix 47	AF2	B	603	623	Right-handed alpha
Helix 48	AF3	B	651	655	Right-handed 310
Helix 49	AF4	B	657	663	Right-handed alpha
Helix 50	AF5	B	664	681	Right-handed alpha
Helix 51	AF6	B	770	777	Right-handed alpha
Helix 52	AF7	B	778	783	Right-handed alpha
Helix 53	AF8	C	283	287	Right-handed 310
Helix 54	AF9	C	293	299	Right-handed alpha
Helix 55	AG1	C	300	304	Right-handed 310
Helix 56	AG2	C	312	318	Right-handed alpha
Helix 57	AG3	C	319	327	Right-handed alpha
Helix 58	AG4	C	355	359	Right-handed 310
Helix 59	AG5	C	363	381	Right-handed alpha
Helix 60	AG6	C	405	410	Right-handed alpha
Helix 61	AG7	C	410	415	Right-handed alpha
Helix 62	AG8	C	432	451	Right-handed alpha
Helix 63	AG9	C	460	465	Right-handed 310
Helix 64	AH1	C	475	483	Right-handed alpha
Helix 65	AH2	C	519	531	Right-handed alpha
Helix 66	AH3	C	535	544	Right-handed alpha
Helix 67	AH4	C	554	556	Right-handed 310
Helix 68	AH5	C	571	575	Right-handed 310
Helix 69	AH6	C	581	585	Right-handed 310
Helix 70	AH7	C	597	617	Right-handed alpha
Helix 71	AH8	C	639	643	Right-handed 310
Helix 72	AH9	C	653	673	Right-handed alpha
Helix 73	AI1	C	673	678	Right-handed alpha
Helix 74	AI2	C	684	686	Right-handed 310

There are 25 sheets in PDB entry 9J6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	112	118	anti-parallel
Strand 4	A	105	109	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	124	130	anti-parallel
Strand 3	A	169	175	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	184	185	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	487	first strand
Strand 2	A	428	431	parallel
Strand 3	A	353	358	parallel
Strand 4	A	286	289	parallel
Strand 5	A	247	250	parallel
Strand 6	A	627	631	parallel
Strand 7	A	553	556	parallel
Strand 8	A	509	511	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	316	320	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	698	first strand
Strand 2	A	713	719	anti-parallel
Strand 3	A	725	731	anti-parallel
Strand 4	A	793	801	anti-parallel
Strand 5	A	747	754	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	740	first strand
Strand 2	A	786	789	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	105	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	152	153	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	124	130	anti-parallel
Strand 3	B	169	175	anti-parallel
Strand 4	B	220	222	anti-parallel
Strand 5	B	200	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	184	185	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	286	289	parallel
Strand 3	B	353	358	parallel
Strand 4	B	428	431	parallel
Strand 5	B	484	487	parallel
Strand 6	B	508	510	parallel
Strand 7	B	553	556	parallel
Strand 8	B	627	631	parallel
Strand 9	B	247	250	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	314	320	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	698	first strand
Strand 2	B	713	720	anti-parallel
Strand 3	B	724	731	anti-parallel
Strand 4	B	793	801	anti-parallel
Strand 5	B	747	754	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	740	first strand
Strand 2	B	786	789	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	43	first strand
Strand 2	C	49	55	anti-parallel
Strand 3	C	66	73	anti-parallel
Strand 4	C	103	110	anti-parallel
Strand 5	C	96	97	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	83	85	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	130	131	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	83	85	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	139	143	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	208	213	anti-parallel
Strand 4	C	204	205	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	175	180	anti-parallel
Strand 3	C	221	226	anti-parallel
Strand 4	C	264	265	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	292	first strand
Strand 2	C	330	333	parallel
Strand 3	C	384	389	parallel
Strand 4	C	454	458	parallel
Strand 5	C	491	495	parallel
Strand 6	C	516	518	parallel
Strand 7	C	558	560	parallel
Strand 8	C	621	625	parallel
Strand 9	C	289	292	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	426	427	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	688	691	first strand
Strand 2	C	707	712	anti-parallel
Strand 3	C	728	733	anti-parallel
Strand 4	C	789	797	anti-parallel
Strand 5	C	750	757	anti-parallel
Strand 6	C	776	777	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	739	742	first strand
Strand 2	C	782	785	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J6X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J6X