Analysis of interatomic Contacts of Structural Units in PDB entry:
9J72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J72 entry

There is 1 chain in PDB entry 9J72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PRO 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9J72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
15 37Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
130 136Right-handed alpha
Helix 5
AA5
A
144 165Right-handed alpha
Helix 6
AA6
A
172 191Right-handed alpha
Helix 7
AA7
A
195 225Right-handed alpha
Helix 8
AA8
A
228 255Right-handed alpha
Helix 9
AA9
A
258 276Right-handed alpha
Helix 10
AB1
A
282 290Right-handed alpha
Helix 11
AB2
A
291 307Right-handed alpha
Helix 12
AB3
A
311 315Right-handed 310
Helix 13
AB4
A
317 324Right-handed alpha
Helix 14
AB5
A
348 368Right-handed alpha
Helix 15
AB6
A
389 402Right-handed alpha
Helix 16
AB7
A
404 426Right-handed alpha
Helix 17
AB8
A
430 447Right-handed alpha
Helix 18
AB9
A
447 455Right-handed alpha
Helix 19
AC1
A
465 480Right-handed alpha
Helix 20
AC2
A
481 483Right-handed 310
Helix 21
AC3
A
485 491Right-handed 310
Helix 22
AC4
A
494 513Right-handed alpha
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There are 2 sheets in PDB entry 9J72. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il