Analysis of interatomic Contacts of Structural Units in PDB entry:
9J78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J78 entry

There are 7 chains in PDB entry 9J78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 1	ASP 101
B	THR 1	VAL 744
C	MET 17	CYS 112
D	ASP 2	PRO 100
J	MET 1	HIS 627
F	MET 1	HIS 627
A	THR 1	MET 146

There are145 helices in PDB entry 9J78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	23	36	Right-handed alpha
Helix 2	AA2	H	38	42	Right-handed 310
Helix 3	AA3	H	56	61	Right-handed alpha
Helix 4	AA4	B	9	26	Right-handed alpha
Helix 5	AA5	B	31	46	Right-handed alpha
Helix 6	AA6	B	53	79	Right-handed alpha
Helix 7	AA7	B	82	105	Right-handed alpha
Helix 8	AA8	B	105	110	Right-handed alpha
Helix 9	AA9	B	138	151	Right-handed alpha
Helix 10	AB1	B	156	173	Right-handed alpha
Helix 11	AB2	B	177	186	Right-handed alpha
Helix 12	AB3	B	200	205	Right-handed alpha
Helix 13	AB4	B	208	229	Right-handed alpha
Helix 14	AB5	B	231	254	Right-handed alpha
Helix 15	AB6	B	255	257	Right-handed 310
Helix 16	AB7	B	258	271	Right-handed alpha
Helix 17	AB8	B	274	289	Right-handed alpha
Helix 18	AB9	B	290	304	Right-handed alpha
Helix 19	AC1	B	307	329	Right-handed alpha
Helix 20	AC2	B	334	356	Right-handed alpha
Helix 21	AC3	B	361	377	Right-handed alpha
Helix 22	AC4	B	386	400	Right-handed alpha
Helix 23	AC5	B	407	423	Right-handed alpha
Helix 24	AC6	B	427	445	Right-handed alpha
Helix 25	AC7	B	450	466	Right-handed alpha
Helix 26	AC8	B	470	482	Right-handed alpha
Helix 27	AC9	B	482	497	Right-handed alpha
Helix 28	AD1	B	532	547	Right-handed alpha
Helix 29	AD2	B	579	591	Right-handed alpha
Helix 30	AD3	B	595	604	Right-handed alpha
Helix 31	AD4	B	606	621	Right-handed alpha
Helix 32	AD5	B	661	692	Right-handed alpha
Helix 33	AD6	B	695	707	Right-handed alpha
Helix 34	AD7	B	708	710	Right-handed 310
Helix 35	AD8	B	714	728	Right-handed alpha
Helix 36	AD9	C	33	37	Right-handed alpha
Helix 37	AE1	C	39	47	Right-handed alpha
Helix 38	AE2	C	66	83	Right-handed alpha
Helix 39	AE3	C	101	110	Right-handed alpha
Helix 40	AE4	D	24	36	Right-handed alpha
Helix 41	AE5	J	2	14	Right-handed alpha
Helix 42	AE6	J	17	24	Right-handed alpha
Helix 43	AE7	J	29	37	Right-handed alpha
Helix 44	AE8	J	48	56	Right-handed alpha
Helix 45	AE9	J	58	69	Right-handed alpha
Helix 46	AF1	J	90	99	Right-handed alpha
Helix 47	AF2	J	100	110	Right-handed alpha
Helix 48	AF3	J	123	132	Right-handed alpha
Helix 49	AF4	J	133	143	Right-handed alpha
Helix 50	AF5	J	156	164	Right-handed alpha
Helix 51	AF6	J	166	175	Right-handed alpha
Helix 52	AF7	J	190	198	Right-handed alpha
Helix 53	AF8	J	199	209	Right-handed alpha
Helix 54	AF9	J	221	229	Right-handed alpha
Helix 55	AG1	J	231	240	Right-handed alpha
Helix 56	AG2	J	245	260	Right-handed alpha
Helix 57	AG3	J	268	284	Right-handed alpha
Helix 58	AG4	J	299	303	Right-handed 310
Helix 59	AG5	J	310	316	Right-handed alpha
Helix 60	AG6	J	320	337	Right-handed alpha
Helix 61	AG7	J	343	357	Right-handed alpha
Helix 62	AG8	J	359	377	Right-handed alpha
Helix 63	AG9	J	381	398	Right-handed alpha
Helix 64	AH1	J	403	428	Right-handed alpha
Helix 65	AH2	J	432	457	Right-handed alpha
Helix 66	AH3	J	460	476	Right-handed alpha
Helix 67	AH4	J	486	493	Right-handed alpha
Helix 68	AH5	J	502	507	Right-handed alpha
Helix 69	AH6	J	511	521	Right-handed alpha
Helix 70	AH7	J	534	540	Right-handed alpha
Helix 71	AH8	J	548	563	Right-handed alpha
Helix 72	AH9	J	582	593	Right-handed alpha
Helix 73	AI1	J	596	609	Right-handed alpha
Helix 74	AI2	J	617	626	Right-handed alpha
Helix 75	AI3	F	2	14	Right-handed alpha
Helix 76	AI4	F	17	24	Right-handed alpha
Helix 77	AI5	F	28	36	Right-handed alpha
Helix 78	AI6	F	48	56	Right-handed alpha
Helix 79	AI7	F	58	69	Right-handed alpha
Helix 80	AI8	F	92	98	Right-handed alpha
Helix 81	AI9	F	100	110	Right-handed alpha
Helix 82	AJ1	F	123	132	Right-handed alpha
Helix 83	AJ2	F	133	143	Right-handed alpha
Helix 84	AJ3	F	156	164	Right-handed alpha
Helix 85	AJ4	F	166	174	Right-handed alpha
Helix 86	AJ5	F	175	177	Right-handed 310
Helix 87	AJ6	F	190	195	Right-handed alpha
Helix 88	AJ7	F	199	209	Right-handed alpha
Helix 89	AJ8	F	221	229	Right-handed alpha
Helix 90	AJ9	F	231	239	Right-handed alpha
Helix 91	AK1	F	246	262	Right-handed alpha
Helix 92	AK2	F	268	284	Right-handed alpha
Helix 93	AK3	F	310	317	Right-handed alpha
Helix 94	AK4	F	320	337	Right-handed alpha
Helix 95	AK5	F	344	357	Right-handed alpha
Helix 96	AK6	F	360	377	Right-handed alpha
Helix 97	AK7	F	381	398	Right-handed alpha
Helix 98	AK8	F	403	428	Right-handed alpha
Helix 99	AK9	F	432	457	Right-handed alpha
Helix 100	AL1	F	460	478	Right-handed alpha
Helix 101	AL2	F	486	491	Right-handed alpha
Helix 102	AL3	F	501	506	Right-handed 310
Helix 103	AL4	F	511	522	Right-handed alpha
Helix 104	AL5	F	535	540	Right-handed alpha
Helix 105	AL6	F	548	563	Right-handed alpha
Helix 106	AL7	F	582	593	Right-handed alpha
Helix 107	AL8	F	596	609	Right-handed alpha
Helix 108	AL9	F	617	627	Right-handed alpha
Helix 109	AM1	A	9	26	Right-handed alpha
Helix 110	AM2	A	31	48	Right-handed alpha
Helix 111	AM3	A	53	78	Right-handed alpha
Helix 112	AM4	A	82	105	Right-handed alpha
Helix 113	AM5	A	105	111	Right-handed alpha
Helix 114	AM6	A	138	150	Right-handed alpha
Helix 115	AM7	A	155	173	Right-handed alpha
Helix 116	AM8	A	177	186	Right-handed alpha
Helix 117	AM9	A	200	207	Right-handed alpha
Helix 118	AN1	A	208	230	Right-handed alpha
Helix 119	AN2	A	231	252	Right-handed alpha
Helix 120	AN3	A	255	257	Right-handed 310
Helix 121	AN4	A	258	269	Right-handed alpha
Helix 122	AN5	A	274	289	Right-handed alpha
Helix 123	AN6	A	292	301	Right-handed alpha
Helix 124	AN7	A	308	325	Right-handed alpha
Helix 125	AN8	A	334	357	Right-handed alpha
Helix 126	AN9	A	361	373	Right-handed alpha
Helix 127	AO1	A	386	400	Right-handed alpha
Helix 128	AO2	A	408	425	Right-handed alpha
Helix 129	AO3	A	427	445	Right-handed alpha
Helix 130	AO4	A	450	465	Right-handed alpha
Helix 131	AO5	A	466	496	Right-handed alpha
Helix 132	AO6	A	530	534	Right-handed 310
Helix 133	AO7	A	536	545	Right-handed alpha
Helix 134	AO8	A	579	591	Right-handed alpha
Helix 135	AO9	A	595	603	Right-handed alpha
Helix 136	AP1	A	606	620	Right-handed alpha
Helix 137	AP2	A	661	692	Right-handed alpha
Helix 138	AP3	A	695	707	Right-handed alpha
Helix 139	AP4	A	714	728	Right-handed alpha
Helix 140	AP5	G	33	38	Right-handed alpha
Helix 141	AP6	G	40	47	Right-handed alpha
Helix 142	AP7	G	66	83	Right-handed alpha
Helix 143	AP8	G	102	111	Right-handed alpha
Helix 144	AP9	K	132	137	Right-handed alpha
Helix 145	AQ1	L	132	137	Right-handed alpha

There are 11 sheets in PDB entry 9J78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	18	first strand
Strand 2	H	3	9	anti-parallel
Strand 3	H	74	78	parallel
Strand 4	H	43	46	anti-parallel
Strand 5	H	49	50	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	81	first strand
Strand 2	H	84	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	E	32	35	parallel
Strand 3	B	551	554	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	578	first strand
Strand 2	B	561	566	anti-parallel
Strand 3	E	22	28	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	31	32	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	60	61	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	18	first strand
Strand 2	D	3	9	anti-parallel
Strand 3	D	74	76	parallel
Strand 4	D	45	46	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	42	first strand
Strand 2	J	45	47	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	42	first strand
Strand 2	F	45	47	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	578	first strand
Strand 2	A	561	562	anti-parallel
Strand 3	I	27	28	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	18	22	anti-parallel
Strand 3	G	59	61	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J78

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J78