Analysis of interatomic Contacts of Structural Units in PDB entry:
9J79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J79 entry

There are 5 chains in PDB entry 9J79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 1	VAL 744
F	MET 17	CYS 112
H	ASP 2	PRO 100
I	GLU 23	GLN 104
K	THR 1	ARG 249

There are232 helices in PDB entry 9J79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	9	26	Right-handed alpha
Helix 2	AA2	E	31	45	Right-handed alpha
Helix 3	AA3	E	53	79	Right-handed alpha
Helix 4	AA4	E	82	105	Right-handed alpha
Helix 5	AA5	E	105	112	Right-handed alpha
Helix 6	AA6	E	138	151	Right-handed alpha
Helix 7	AA7	E	152	154	Right-handed 310
Helix 8	AA8	E	155	172	Right-handed alpha
Helix 9	AA9	E	177	191	Right-handed alpha
Helix 10	AB1	E	192	195	Right-handed 310
Helix 11	AB2	E	200	207	Right-handed alpha
Helix 12	AB3	E	207	227	Right-handed alpha
Helix 13	AB4	E	231	254	Right-handed alpha
Helix 14	AB5	E	255	257	Right-handed 310
Helix 15	AB6	E	258	271	Right-handed alpha
Helix 16	AB7	E	274	289	Right-handed alpha
Helix 17	AB8	E	290	304	Right-handed alpha
Helix 18	AB9	E	307	327	Right-handed alpha
Helix 19	AC1	E	334	357	Right-handed alpha
Helix 20	AC2	E	361	377	Right-handed alpha
Helix 21	AC3	E	386	400	Right-handed alpha
Helix 22	AC4	E	407	423	Right-handed alpha
Helix 23	AC5	E	427	445	Right-handed alpha
Helix 24	AC6	E	450	466	Right-handed alpha
Helix 25	AC7	E	470	492	Right-handed alpha
Helix 26	AC8	E	492	497	Right-handed alpha
Helix 27	AC9	E	533	548	Right-handed alpha
Helix 28	AD1	E	578	587	Right-handed alpha
Helix 29	AD2	E	588	590	Right-handed 310
Helix 30	AD3	E	595	604	Right-handed alpha
Helix 31	AD4	E	606	619	Right-handed alpha
Helix 32	AD5	E	661	692	Right-handed alpha
Helix 33	AD6	E	695	708	Right-handed alpha
Helix 34	AD7	E	714	728	Right-handed alpha
Helix 35	AD8	F	33	37	Right-handed alpha
Helix 36	AD9	F	39	47	Right-handed alpha
Helix 37	AE1	F	66	83	Right-handed alpha
Helix 38	AE2	F	102	111	Right-handed alpha
Helix 39	AE3	H	24	36	Right-handed alpha
Helix 40	AE4	H	57	61	Right-handed 310
Helix 41	AE5	I	81	91	Right-handed alpha
Helix 42	AE6	K	9	26	Right-handed alpha
Helix 43	AE7	K	31	47	Right-handed alpha
Helix 44	AE8	K	53	79	Right-handed alpha
Helix 45	AE9	K	84	105	Right-handed alpha
Helix 46	AF1	K	105	112	Right-handed alpha
Helix 47	AF2	K	138	149	Right-handed alpha
Helix 48	AF3	K	155	173	Right-handed alpha
Helix 49	AF4	K	177	189	Right-handed alpha
Helix 50	AF5	K	200	207	Right-handed alpha
Helix 51	AF6	K	207	230	Right-handed alpha
Helix 52	AF7	K	231	252	Right-handed alpha
Helix 53	AF8	K	255	257	Right-handed 310
Helix 54	AF9	K	258	271	Right-handed alpha
Helix 55	AG1	K	274	288	Right-handed alpha
Helix 56	AG2	K	290	304	Right-handed alpha
Helix 57	AG3	K	307	329	Right-handed alpha
Helix 58	AG4	K	334	357	Right-handed alpha
Helix 59	AG5	K	361	377	Right-handed alpha
Helix 60	AG6	K	386	400	Right-handed alpha
Helix 61	AG7	K	407	424	Right-handed alpha
Helix 62	AG8	K	427	442	Right-handed alpha
Helix 63	AG9	K	450	466	Right-handed alpha
Helix 64	AH1	K	470	496	Right-handed alpha
Helix 65	AH2	K	530	548	Right-handed alpha
Helix 66	AH3	K	579	591	Right-handed alpha
Helix 67	AH4	K	595	604	Right-handed alpha
Helix 68	AH5	K	606	619	Right-handed alpha
Helix 69	AH6	K	661	692	Right-handed alpha
Helix 70	AH7	K	695	707	Right-handed alpha
Helix 71	AH8	K	714	728	Right-handed alpha
Helix 72	AH9	L	33	37	Right-handed alpha
Helix 73	AI1	L	39	47	Right-handed alpha
Helix 74	AI2	L	66	83	Right-handed alpha
Helix 75	AI3	L	102	105	Right-handed 310
Helix 76	AI4	L	106	111	Right-handed alpha
Helix 77	AI5	M	26	36	Right-handed alpha
Helix 78	AI6	M	38	42	Right-handed 310
Helix 79	AI7	N	53	58	Right-handed alpha
Helix 80	AI8	N	81	91	Right-handed alpha
Helix 81	AI9	J	2	14	Right-handed alpha
Helix 82	AJ1	J	16	24	Right-handed alpha
Helix 83	AJ2	J	29	37	Right-handed alpha
Helix 84	AJ3	J	48	56	Right-handed alpha
Helix 85	AJ4	J	58	69	Right-handed alpha
Helix 86	AJ5	J	90	98	Right-handed alpha
Helix 87	AJ6	J	100	111	Right-handed alpha
Helix 88	AJ7	J	123	132	Right-handed alpha
Helix 89	AJ8	J	133	143	Right-handed alpha
Helix 90	AJ9	J	156	162	Right-handed alpha
Helix 91	AK1	J	166	176	Right-handed alpha
Helix 92	AK2	J	189	198	Right-handed alpha
Helix 93	AK3	J	199	210	Right-handed alpha
Helix 94	AK4	J	221	229	Right-handed alpha
Helix 95	AK5	J	231	242	Right-handed alpha
Helix 96	AK6	J	245	260	Right-handed alpha
Helix 97	AK7	J	268	285	Right-handed alpha
Helix 98	AK8	J	310	318	Right-handed alpha
Helix 99	AK9	J	320	337	Right-handed alpha
Helix 100	AL1	J	340	343	Right-handed 310
Helix 101	AL2	J	344	357	Right-handed alpha
Helix 102	AL3	J	359	377	Right-handed alpha
Helix 103	AL4	J	382	398	Right-handed alpha
Helix 104	AL5	J	403	428	Right-handed alpha
Helix 105	AL6	J	432	457	Right-handed alpha
Helix 106	AL7	J	460	478	Right-handed alpha
Helix 107	AL8	J	486	493	Right-handed alpha
Helix 108	AL9	J	501	506	Right-handed 310
Helix 109	AM1	J	511	522	Right-handed alpha
Helix 110	AM2	J	534	541	Right-handed alpha
Helix 111	AM3	J	548	563	Right-handed alpha
Helix 112	AM4	J	582	592	Right-handed alpha
Helix 113	AM5	J	596	609	Right-handed alpha
Helix 114	AM6	J	617	627	Right-handed alpha
Helix 115	AM7	A	2	15	Right-handed alpha
Helix 116	AM8	A	17	24	Right-handed alpha
Helix 117	AM9	A	28	37	Right-handed alpha
Helix 118	AN1	A	48	57	Right-handed alpha
Helix 119	AN2	A	58	68	Right-handed alpha
Helix 120	AN3	A	90	99	Right-handed alpha
Helix 121	AN4	A	100	111	Right-handed alpha
Helix 122	AN5	A	123	132	Right-handed alpha
Helix 123	AN6	A	133	143	Right-handed alpha
Helix 124	AN7	A	156	164	Right-handed alpha
Helix 125	AN8	A	166	176	Right-handed alpha
Helix 126	AN9	A	199	209	Right-handed alpha
Helix 127	AO1	A	221	229	Right-handed alpha
Helix 128	AO2	A	231	240	Right-handed alpha
Helix 129	AO3	A	245	262	Right-handed alpha
Helix 130	AO4	A	268	284	Right-handed alpha
Helix 131	AO5	A	299	303	Right-handed 310
Helix 132	AO6	A	310	317	Right-handed alpha
Helix 133	AO7	A	320	337	Right-handed alpha
Helix 134	AO8	A	340	342	Right-handed 310
Helix 135	AO9	A	343	357	Right-handed alpha
Helix 136	AP1	A	359	378	Right-handed alpha
Helix 137	AP2	A	381	398	Right-handed alpha
Helix 138	AP3	A	403	428	Right-handed alpha
Helix 139	AP4	A	432	457	Right-handed alpha
Helix 140	AP5	A	460	478	Right-handed alpha
Helix 141	AP6	A	486	493	Right-handed alpha
Helix 142	AP7	A	502	507	Right-handed alpha
Helix 143	AP8	A	511	522	Right-handed alpha
Helix 144	AP9	A	534	541	Right-handed alpha
Helix 145	AQ1	A	548	560	Right-handed alpha
Helix 146	AQ2	A	582	593	Right-handed alpha
Helix 147	AQ3	A	599	608	Right-handed alpha
Helix 148	AQ4	A	617	627	Right-handed alpha
Helix 149	AQ5	B	67	84	Right-handed alpha
Helix 150	AQ6	B	85	100	Right-handed alpha
Helix 151	AQ7	B	105	111	Right-handed alpha
Helix 152	AQ8	B	115	124	Right-handed alpha
Helix 153	AQ9	G	64	84	Right-handed alpha
Helix 154	AR1	G	85	99	Right-handed alpha
Helix 155	AR2	G	102	114	Right-handed alpha
Helix 156	AR3	G	115	126	Right-handed alpha
Helix 157	AR4	D	2	10	Right-handed alpha
Helix 158	AR5	O	2	14	Right-handed alpha
Helix 159	AR6	O	16	25	Right-handed alpha
Helix 160	AR7	O	29	36	Right-handed alpha
Helix 161	AR8	O	41	45	Right-handed 310
Helix 162	AR9	O	48	56	Right-handed alpha
Helix 163	AS1	O	58	69	Right-handed alpha
Helix 164	AS2	O	90	98	Right-handed alpha
Helix 165	AS3	O	100	111	Right-handed alpha
Helix 166	AS4	O	123	132	Right-handed alpha
Helix 167	AS5	O	133	143	Right-handed alpha
Helix 168	AS6	O	156	162	Right-handed alpha
Helix 169	AS7	O	166	176	Right-handed alpha
Helix 170	AS8	O	189	197	Right-handed alpha
Helix 171	AS9	O	199	210	Right-handed alpha
Helix 172	AT1	O	221	228	Right-handed alpha
Helix 173	AT2	O	232	241	Right-handed alpha
Helix 174	AT3	O	245	260	Right-handed alpha
Helix 175	AT4	O	268	284	Right-handed alpha
Helix 176	AT5	O	285	287	Right-handed 310
Helix 177	AT6	O	312	317	Right-handed alpha
Helix 178	AT7	O	320	337	Right-handed alpha
Helix 179	AT8	O	340	357	Right-handed alpha
Helix 180	AT9	O	359	377	Right-handed alpha
Helix 181	AU1	O	381	399	Right-handed alpha
Helix 182	AU2	O	403	428	Right-handed alpha
Helix 183	AU3	O	432	457	Right-handed alpha
Helix 184	AU4	O	460	478	Right-handed alpha
Helix 185	AU5	O	486	493	Right-handed alpha
Helix 186	AU6	O	502	507	Right-handed alpha
Helix 187	AU7	O	511	520	Right-handed alpha
Helix 188	AU8	O	534	541	Right-handed alpha
Helix 189	AU9	O	548	562	Right-handed alpha
Helix 190	AV1	O	582	592	Right-handed alpha
Helix 191	AV2	P	2	15	Right-handed alpha
Helix 192	AV3	P	18	25	Right-handed alpha
Helix 193	AV4	P	28	36	Right-handed alpha
Helix 194	AV5	P	48	57	Right-handed alpha
Helix 195	AV6	P	58	67	Right-handed alpha
Helix 196	AV7	P	90	98	Right-handed alpha
Helix 197	AV8	P	100	111	Right-handed alpha
Helix 198	AV9	P	123	132	Right-handed alpha
Helix 199	AW1	P	133	144	Right-handed alpha
Helix 200	AW2	P	156	164	Right-handed alpha
Helix 201	AW3	P	166	174	Right-handed alpha
Helix 202	AW4	P	199	209	Right-handed alpha
Helix 203	AW5	P	221	229	Right-handed alpha
Helix 204	AW6	P	231	240	Right-handed alpha
Helix 205	AW7	P	245	262	Right-handed alpha
Helix 206	AW8	P	268	284	Right-handed alpha
Helix 207	AW9	P	310	317	Right-handed alpha
Helix 208	AX1	P	320	337	Right-handed alpha
Helix 209	AX2	P	343	357	Right-handed alpha
Helix 210	AX3	P	359	377	Right-handed alpha
Helix 211	AX4	P	381	398	Right-handed alpha
Helix 212	AX5	P	403	428	Right-handed alpha
Helix 213	AX6	P	432	457	Right-handed alpha
Helix 214	AX7	P	460	478	Right-handed alpha
Helix 215	AX8	P	488	492	Right-handed 310
Helix 216	AX9	P	502	507	Right-handed alpha
Helix 217	AY1	P	511	522	Right-handed alpha
Helix 218	AY2	P	534	542	Right-handed alpha
Helix 219	AY3	P	543	548	Right-handed alpha
Helix 220	AY4	P	548	554	Right-handed alpha
Helix 221	AY5	P	555	560	Right-handed alpha
Helix 222	AY6	S	42	52	Right-handed alpha
Helix 223	AY7	S	53	58	Right-handed alpha
Helix 224	AY8	S	60	75	Right-handed alpha
Helix 225	AY9	S	77	89	Right-handed alpha
Helix 226	AZ1	S	90	100	Right-handed alpha
Helix 227	AZ2	C	42	58	Right-handed alpha
Helix 228	AZ3	C	60	75	Right-handed alpha
Helix 229	AZ4	C	77	88	Right-handed alpha
Helix 230	AZ5	C	90	101	Right-handed alpha
Helix 231	AZ6	Q	2	8	Right-handed alpha
Helix 232	AZ7	R	4	8	Right-handed 310

There are 19 sheets in PDB entry 9J79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	512	first strand
Strand 2	I	28	34	parallel
Strand 3	E	552	553	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	512	first strand
Strand 2	I	28	34	parallel
Strand 3	E	556	561	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	594	first strand
Strand 2	E	638	639	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	693	694	first strand
Strand 2	E	741	743	anti-parallel
Strand 3	E	731	733	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	31	32	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	60	61	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	17	18	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	6	8	anti-parallel
Strand 3	H	74	75	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	79	80	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	512	513	first strand
Strand 2	N	32	33	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	650	652	first strand
Strand 2	K	574	578	parallel
Strand 3	K	561	566	anti-parallel
Strand 4	N	22	23	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	623	625	first strand
Strand 2	K	638	640	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	731	733	first strand
Strand 2	K	741	743	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	61	first strand
Strand 2	L	18	22	parallel
Strand 3	L	28	32	anti-parallel
Strand 4	M	12	18	parallel
Strand 5	M	3	9	anti-parallel
Strand 6	M	73	76	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	41	42	first strand
Strand 2	N	47	48	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	71	first strand
Strand 2	N	79	80	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	80	first strand
Strand 2	J	85	88	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	45	46	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	79	80	first strand
Strand 2	O	85	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J79

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J79