Analysis of interatomic Contacts of Structural Units in PDB entry:
9J7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J7H entry

There are 4 chains in PDB entry 9J7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	LYS 351
B	ASN 2	LYS 351
C	TYR 3	LYS 351
D	TYR 3	ASN 350

There are 45 helices in PDB entry 9J7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	26	Right-handed alpha
Helix 2	AA2	A	29	48	Right-handed alpha
Helix 3	AA3	A	65	83	Right-handed alpha
Helix 4	AA4	A	119	136	Right-handed alpha
Helix 5	AA5	A	149	154	Right-handed alpha
Helix 6	AA6	A	169	178	Right-handed alpha
Helix 7	AA7	A	193	204	Right-handed alpha
Helix 8	AA8	A	242	256	Right-handed alpha
Helix 9	AA9	A	277	292	Right-handed alpha
Helix 10	AB1	A	330	349	Right-handed alpha
Helix 11	AB2	B	18	26	Right-handed alpha
Helix 12	AB3	B	29	48	Right-handed alpha
Helix 13	AB4	B	65	83	Right-handed alpha
Helix 14	AB5	B	119	136	Right-handed alpha
Helix 15	AB6	B	149	154	Right-handed alpha
Helix 16	AB7	B	155	157	Right-handed 310
Helix 17	AB8	B	169	178	Right-handed alpha
Helix 18	AB9	B	193	204	Right-handed alpha
Helix 19	AC1	B	242	256	Right-handed alpha
Helix 20	AC2	B	267	271	Right-handed 310
Helix 21	AC3	B	278	292	Right-handed alpha
Helix 22	AC4	B	330	351	Right-handed alpha
Helix 23	AC5	C	19	26	Right-handed alpha
Helix 24	AC6	C	29	48	Right-handed alpha
Helix 25	AC7	C	65	83	Right-handed alpha
Helix 26	AC8	C	119	136	Right-handed alpha
Helix 27	AC9	C	149	154	Right-handed alpha
Helix 28	AD1	C	155	157	Right-handed 310
Helix 29	AD2	C	163	167	Right-handed 310
Helix 30	AD3	C	169	178	Right-handed alpha
Helix 31	AD4	C	193	204	Right-handed alpha
Helix 32	AD5	C	242	256	Right-handed alpha
Helix 33	AD6	C	285	292	Right-handed alpha
Helix 34	AD7	C	330	349	Right-handed alpha
Helix 35	AD8	D	18	26	Right-handed alpha
Helix 36	AD9	D	29	48	Right-handed alpha
Helix 37	AE1	D	65	83	Right-handed alpha
Helix 38	AE2	D	119	136	Right-handed alpha
Helix 39	AE3	D	149	154	Right-handed alpha
Helix 40	AE4	D	155	157	Right-handed 310
Helix 41	AE5	D	163	167	Right-handed 310
Helix 42	AE6	D	169	178	Right-handed alpha
Helix 43	AE7	D	193	204	Right-handed alpha
Helix 44	AE8	D	242	256	Right-handed alpha
Helix 45	AE9	D	332	350	Right-handed alpha

There are 8 sheets in PDB entry 9J7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	15	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	208	212	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	87	92	parallel
Strand 3	A	140	143	parallel
Strand 4	A	157	162	parallel
Strand 5	A	183	186	parallel
Strand 6	A	229	235	parallel
Strand 7	A	262	269	parallel
Strand 8	A	296	302	parallel
Strand 9	A	54	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	B	10	15	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	87	92	parallel
Strand 3	B	140	143	parallel
Strand 4	B	159	162	parallel
Strand 5	B	183	186	parallel
Strand 6	B	229	233	parallel
Strand 7	B	262	265	parallel
Strand 8	B	296	302	parallel
Strand 9	B	54	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	15	first strand
Strand 2	D	218	223	anti-parallel
Strand 3	D	208	212	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	87	92	parallel
Strand 3	C	140	143	parallel
Strand 4	C	159	162	parallel
Strand 5	C	183	186	parallel
Strand 6	C	229	235	parallel
Strand 7	C	262	269	parallel
Strand 8	C	296	302	parallel
Strand 9	C	54	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	218	223	anti-parallel
Strand 3	D	10	15	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	87	92	parallel
Strand 3	D	140	143	parallel
Strand 4	D	159	162	parallel
Strand 5	D	183	186	parallel
Strand 6	D	229	235	parallel
Strand 7	D	262	269	parallel
Strand 8	D	296	302	parallel
Strand 9	D	54	59	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J7H