Analysis of interatomic Contacts of Structural Units in PDB entry:
9J7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J7I entry

There are 2 chains in PDB entry 9J7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24ASN 541
B
 VAL 2GLY 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9J7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 83Right-handed alpha
Helix 2
AA2
A
103 115Right-handed alpha
Helix 3
AA3
A
146 160Right-handed alpha
Helix 4
AA4
A
171 176Right-handed 310
Helix 5
AA5
A
189 204Right-handed alpha
Helix 6
AA6
A
219 233Right-handed alpha
Helix 7
AA7
A
248 260Right-handed alpha
Helix 8
AA8
A
272 287Right-handed alpha
Helix 9
AA9
A
307 309Right-handed 310
Helix 10
AB1
A
310 315Right-handed alpha
Helix 11
AB2
A
329 336Right-handed alpha
Helix 12
AB3
A
347 356Right-handed alpha
Helix 13
AB4
A
415 436Right-handed alpha
Helix 14
AB5
A
444 448Right-handed 310
Helix 15
AB6
A
451 455Right-handed 310
Helix 16
AB7
A
456 466Right-handed alpha
Helix 17
AB8
A
529 533Right-handed 310
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There are 6 sheets in PDB entry 9J7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
138 142parallel
Strand 5
A
164 166parallel
Strand 6
A
183 185parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
208 214parallel
Strand 3
A
241 243parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
208 214parallel
Strand 3
A
266 270parallel
Strand 4
A
292 294parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
489 496anti-parallel
Strand 3
A
503 507anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 511first strand
Strand 2
A
521 523anti-parallel
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