Analysis of interatomic Contacts of Structural Units in PDB entry:
9J7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J7W entry

There are 2 chains in PDB entry 9J7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27ARG 291
C
 SER 27ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9J7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 71Right-handed alpha
Helix 2
AA2
A
72 74Right-handed 310
Helix 3
AA3
A
77 97Right-handed alpha
Helix 4
AA4
A
116 135Right-handed alpha
Helix 5
AA5
A
144 167Right-handed alpha
Helix 6
AA6
A
169 201Right-handed alpha
Helix 7
AA7
A
202 204Right-handed 310
Helix 8
AA8
A
205 221Right-handed alpha
Helix 9
AA9
A
221 230Right-handed alpha
Helix 10
AB1
A
238 254Right-handed alpha
Helix 11
AB2
A
254 275Right-handed alpha
Helix 12
AB3
C
43 71Right-handed alpha
Helix 13
AB4
C
72 74Right-handed 310
Helix 14
AB5
C
77 97Right-handed alpha
Helix 15
AB6
C
116 135Right-handed alpha
Helix 16
AB7
C
144 167Right-handed alpha
Helix 17
AB8
C
169 201Right-handed alpha
Helix 18
AB9
C
202 204Right-handed 310
Helix 19
AC1
C
205 221Right-handed alpha
Helix 20
AC2
C
221 230Right-handed alpha
Helix 21
AC3
C
238 254Right-handed alpha
Helix 22
AC4
C
254 275Right-handed alpha
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There are 2 sheets in PDB entry 9J7W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
112 115anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 107first strand
Strand 2
C
112 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il