Analysis of interatomic Contacts of Structural Units in PDB entry:
9J7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J7Y entry

There are 2 chains in PDB entry 9J7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 GLY 2GLN 173
H
 GLN 1SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9J7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
2 25Right-handed alpha
Helix 2
AA2
G
60 78Right-handed alpha
Helix 3
AA3
G
83 85Right-handed 310
Helix 4
AA4
G
86 96Right-handed alpha
Helix 5
AA5
G
103 116Right-handed alpha
Helix 6
AA6
G
118 123Right-handed alpha
Helix 7
AA7
G
153 169Right-handed alpha
Helix 8
AA8
H
28 32Right-handed 310
Helix 9
AA9
H
87 91Right-handed 310
Helix 10
AB1
H
100 103Right-handed 310
Helix 11
AB2
H
108 113Right-handed 310
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There are 4 sheets in PDB entry 9J7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
37 47first strand
Strand 2
G
128 137parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
49 52first strand
Strand 2
G
144 147parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
117 122parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il