Analysis of interatomic Contacts of Structural Units in PDB entry:
9J82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J82 entry

There are 4 chains in PDB entry 9J82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ILE 149
A
 GLY 151ARG 429
H
 GLY 1CYS 226
L
 ASP 1CYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9J82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 27Right-handed alpha
Helix 2
AA2
A
83 113Right-handed alpha
Helix 3
AA3
A
119 121Right-handed 310
Helix 4
AA4
A
133 139Right-handed alpha
Helix 5
AA5
A
156 171Right-handed alpha
Helix 6
AA6
A
218 224Right-handed alpha
Helix 7
AA7
A
241 253Right-handed alpha
Helix 8
AA8
A
299 327Right-handed alpha
Helix 9
AA9
A
331 335Right-handed 310
Helix 10
AB1
A
337 352Right-handed alpha
Helix 11
AB2
A
352 371Right-handed alpha
Helix 12
AB3
A
381 393Right-handed alpha
Helix 13
AB4
A
397 429Right-handed alpha
Helix 14
AB5
H
30 34Right-handed 310
Helix 15
AB6
H
55 59Right-handed 310
Helix 16
AB7
H
91 95Right-handed 310
Helix 17
AB8
H
197 199Right-handed 310
Helix 18
AB9
H
211 214Right-handed 310
Helix 19
AC1
L
79 83Right-handed 310
Helix 20
AC2
L
121 128Right-handed alpha
Helix 21
AC3
L
183 187Right-handed alpha
Helix 22
AC4
L
212 214Right-handed 310
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There are 18 sheets in PDB entry 9J82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 48first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
32 37parallel
Strand 4
A
65 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
293 296anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
203 205anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
185 191anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
229 234anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
267 272anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
229 234anti-parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
287 289anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 9first strand
Strand 2
H
20 27anti-parallel
Strand 3
H
82 87anti-parallel
Strand 4
H
72 76anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 14first strand
Strand 2
H
118 122parallel
Strand 3
H
96 98anti-parallel
Strand 4
H
40 41anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 64first strand
Strand 2
H
51 53anti-parallel
Strand 3
H
36 37anti-parallel
Strand 4
H
101 103anti-parallel
Strand 5
H
111 114anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
185 195anti-parallel
Strand 4
H
174 176anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
185 195anti-parallel
Strand 4
H
180 182anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
162 165first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 65anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 146first strand
Strand 2
L
196 197anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
191 193first strand
Strand 2
L
208 210anti-parallel
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