Analysis of interatomic Contacts of Structural Units in PDB entry:
9J87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J87 entry

There are 5 chains in PDB entry 9J87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 77ILE 395
B
 THR 4VAL 246
C
 LYS 15ASN 340
D
 GLU 17PHE 61
E
 ASP 1LEU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9J87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 100Right-handed alpha
Helix 2
AA2
A
107 127Right-handed alpha
Helix 3
AA3
A
127 137Right-handed alpha
Helix 4
AA4
A
149 179Right-handed alpha
Helix 5
AA5
A
179 186Right-handed alpha
Helix 6
AA6
A
191 208Right-handed alpha
Helix 7
AA7
A
209 214Right-handed alpha
Helix 8
AA8
A
217 221Right-handed 310
Helix 9
AA9
A
231 243Right-handed alpha
Helix 10
AB1
A
243 263Right-handed alpha
Helix 11
AB2
A
316 349Right-handed alpha
Helix 12
AB3
A
357 376Right-handed alpha
Helix 13
AB4
A
377 379Right-handed 310
Helix 14
AB5
A
384 395Right-handed alpha
Helix 15
AB6
B
6 31Right-handed alpha
Helix 16
AB7
B
45 49Right-handed 310
Helix 17
AB8
B
91 95Right-handed 310
Helix 18
AB9
B
97 101Right-handed 310
Helix 19
AC1
B
114 130Right-handed alpha
Helix 20
AC2
B
147 154Right-handed alpha
Helix 21
AC3
B
164 168Right-handed 310
Helix 22
AC4
B
183 200Right-handed alpha
Helix 23
AC5
B
222 243Right-handed alpha
Helix 24
AC6
C
16 26Right-handed alpha
Helix 25
AC7
C
29 33Right-handed 310
Helix 26
AC8
D
29 44Right-handed alpha
Helix 27
AC9
D
45 48Right-handed 310
Helix 28
AD1
D
55 59Right-handed 310
Helix 29
AD2
E
28 32Right-handed 310
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There are 13 sheets in PDB entry 9J87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
70 76anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
34 39parallel
Strand 5
B
105 111parallel
Strand 6
B
138 144parallel
Strand 7
B
211 215parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
89 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
120 125anti-parallel
Strand 4
C
134 140anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 153first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
175 181anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
249 254anti-parallel
Strand 4
C
259 265anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
303 307anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
69 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
143 149anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
192 196anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 183first strand
Strand 2
E
173 178anti-parallel
Strand 3
E
162 167anti-parallel
Strand 4
E
213 219anti-parallel
Strand 5
E
231 233anti-parallel
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