Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8A entry

There are 5 chains in PDB entry 9J8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1HIS 226
L
 ALA 1CYS 213
P
 PRO 1ILE 2
P
 ASP 4ASN 6
P
 THR 9GLU 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9J8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
27 31Right-handed 310
Helix 2
AA2
H
85 89Right-handed 310
Helix 3
AA3
H
157 159Right-handed 310
Helix 4
AA4
H
199 202Right-handed 310
Helix 5
AA5
L
29 33Right-handed 310
Helix 6
AA6
L
81 85Right-handed 310
Helix 7
AA7
L
123 128Right-handed alpha
Helix 8
AA8
L
184 188Right-handed alpha
Helix 9
AA9
L
211 213Right-handed 310
Helix 10
AB1
P
4 8Right-handed 310
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There are 10 sheets in PDB entry 9J8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 6first strand
Strand 2
H
17 24anti-parallel
Strand 3
H
76 81anti-parallel
Strand 4
H
66 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 11first strand
Strand 2
H
108 112parallel
Strand 3
H
90 96anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
44 50anti-parallel
Strand 6
H
56 58anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
137 146anti-parallel
Strand 3
H
177 185anti-parallel
Strand 4
H
165 166anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
137 146anti-parallel
Strand 3
H
177 185anti-parallel
Strand 4
H
170 171anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 155first strand
Strand 2
H
192 198anti-parallel
Strand 3
H
203 209anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
72 77anti-parallel
Strand 4
L
64 69anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
104 109parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 51anti-parallel
Strand 6
L
55 56anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
104 109parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
98 100anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 199anti-parallel
Strand 4
L
202 209anti-parallel
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