Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8B entry

There is 1 chain in PDB entry 9J8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58ALA 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9J8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
70 79Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
100 110Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
125 139Right-handed alpha
Helix 9
AA9
A
141 154Right-handed alpha
Helix 10
AB1
A
161 165Right-handed 310
Helix 11
AB2
A
211 216Right-handed alpha
Helix 12
AB3
A
233 254Right-handed alpha
Helix 13
AB4
A
267 279Right-handed alpha
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
299 303Right-handed 310
Helix 16
AB7
A
304 317Right-handed alpha
Helix 17
AB8
A
326 332Right-handed 310
Helix 18
AB9
A
337 372Right-handed alpha
Helix 19
AC1
A
374 378Right-handed 310
Helix 20
AC2
A
385 397Right-handed alpha
Helix 21
AC3
A
399 435Right-handed alpha
Helix 22
AC4
A
442 458Right-handed alpha
Helix 23
AC5
A
465 476Right-handed alpha
Helix 24
AC6
A
481 496Right-handed alpha
Helix 25
AC7
A
498 510Right-handed alpha
Helix 26
AC8
A
515 524Right-handed alpha
Helix 27
AC9
A
524 540Right-handed alpha
Helix 28
AD1
A
543 547Right-handed 310
Helix 29
AD2
A
552 581Right-handed alpha
Helix 30
AD3
A
587 595Right-handed alpha
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There are no sheets in PDB entry 9J8B
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il