Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8F entry

There are 2 chains in PDB entry 9J8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 302
B
 MET 1LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9J8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
17 25Right-handed alpha
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
59 67Right-handed alpha
Helix 5
AA5
A
80 88Right-handed alpha
Helix 6
AA6
A
89 92Right-handed 310
Helix 7
AA7
A
138 152Right-handed alpha
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
216 238Right-handed alpha
Helix 10
AB1
A
241 252Right-handed alpha
Helix 11
AB2
B
3 11Right-handed alpha
Helix 12
AB3
B
18 25Right-handed alpha
Helix 13
AB4
B
27 38Right-handed alpha
Helix 14
AB5
B
59 67Right-handed alpha
Helix 15
AB6
B
80 88Right-handed alpha
Helix 16
AB7
B
89 92Right-handed 310
Helix 17
AB8
B
138 152Right-handed alpha
Helix 18
AB9
B
207 212Right-handed alpha
Helix 19
AC1
B
216 239Right-handed alpha
Helix 20
AC2
B
241 252Right-handed alpha
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There are 6 sheets in PDB entry 9J8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 51anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
97 103parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
183 192anti-parallel
Strand 5
A
166 175anti-parallel
Strand 6
A
160 163anti-parallel
Strand 7
A
154 156anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 292first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
266 275anti-parallel
Strand 4
A
258 263anti-parallel
Strand 5
A
298 301anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
42 45anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 78first strand
Strand 2
B
97 103parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
183 192anti-parallel
Strand 5
B
166 176anti-parallel
Strand 6
B
160 163anti-parallel
Strand 7
B
154 156anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 292first strand
Strand 2
B
281 285anti-parallel
Strand 3
B
266 275anti-parallel
Strand 4
B
258 263anti-parallel
Strand 5
B
298 301anti-parallel
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