Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8I entry

There are 4 chains in PDB entry 9J8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 50PRO 308
B
 SER 50PRO 308
C
 SER 50PRO 308
D
 SER 50PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9J8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed alpha
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
118 126Right-handed alpha
Helix 4
AA4
A
142 160Right-handed alpha
Helix 5
AA5
A
163 165Right-handed 310
Helix 6
AA6
A
179 191Right-handed alpha
Helix 7
AA7
A
232 240Right-handed alpha
Helix 8
AA8
A
257 261Right-handed 310
Helix 9
AA9
A
263 279Right-handed alpha
Helix 10
AB1
A
281 288Right-handed 310
Helix 11
AB2
B
60 66Right-handed alpha
Helix 12
AB3
B
113 118Right-handed 310
Helix 13
AB4
B
119 126Right-handed alpha
Helix 14
AB5
B
142 160Right-handed alpha
Helix 15
AB6
B
163 165Right-handed 310
Helix 16
AB7
B
179 191Right-handed alpha
Helix 17
AB8
B
232 240Right-handed alpha
Helix 18
AB9
B
257 261Right-handed 310
Helix 19
AC1
B
263 279Right-handed alpha
Helix 20
AC2
B
281 283Right-handed 310
Helix 21
AC3
B
284 289Right-handed alpha
Helix 22
AC4
C
60 65Right-handed alpha
Helix 23
AC5
C
113 118Right-handed 310
Helix 24
AC6
C
119 126Right-handed alpha
Helix 25
AC7
C
142 160Right-handed alpha
Helix 26
AC8
C
163 165Right-handed 310
Helix 27
AC9
C
179 191Right-handed alpha
Helix 28
AD1
C
232 240Right-handed alpha
Helix 29
AD2
C
257 261Right-handed 310
Helix 30
AD3
C
263 279Right-handed alpha
Helix 31
AD4
C
281 283Right-handed 310
Helix 32
AD5
C
284 289Right-handed alpha
Helix 33
AD6
D
60 66Right-handed alpha
Helix 34
AD7
D
113 118Right-handed 310
Helix 35
AD8
D
119 126Right-handed alpha
Helix 36
AD9
D
144 160Right-handed alpha
Helix 37
AE1
D
163 165Right-handed 310
Helix 38
AE2
D
178 191Right-handed alpha
Helix 39
AE3
D
232 239Right-handed alpha
Helix 40
AE4
D
257 261Right-handed 310
Helix 41
AE5
D
263 278Right-handed alpha
Helix 42
AE6
D
281 288Right-handed 310
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There are 8 sheets in PDB entry 9J8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
101 107parallel
Strand 5
A
167 178parallel
Strand 6
A
196 202parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 221first strand
Strand 2
A
246 251parallel
Strand 3
A
300 305anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 93anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
101 107parallel
Strand 5
B
167 177parallel
Strand 6
B
196 200parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 221first strand
Strand 2
B
246 251parallel
Strand 3
B
300 305anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 78first strand
Strand 2
C
88 93anti-parallel
Strand 3
C
130 134anti-parallel
Strand 4
C
101 107parallel
Strand 5
C
167 177parallel
Strand 6
C
196 200parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 221first strand
Strand 2
C
246 251parallel
Strand 3
C
300 305anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 78first strand
Strand 2
D
88 93anti-parallel
Strand 3
D
130 134anti-parallel
Strand 4
D
101 107parallel
Strand 5
D
167 177parallel
Strand 6
D
196 200parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
216 221first strand
Strand 2
D
246 251parallel
Strand 3
D
300 305anti-parallel
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