Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8P entry

There are 2 chains in PDB entry 9J8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LYS 874
B
 G 1 U 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9J8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 37Right-handed alpha
Helix 2
AA2
A
37 56Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
102 111Right-handed alpha
Helix 5
AA5
A
147 154Right-handed alpha
Helix 6
AA6
A
158 171Right-handed alpha
Helix 7
AA7
A
173 195Right-handed alpha
Helix 8
AA8
A
204 207Right-handed 310
Helix 9
AA9
A
334 352Right-handed alpha
Helix 10
AB1
A
386 403Right-handed alpha
Helix 11
AB2
A
405 420Right-handed alpha
Helix 12
AB3
A
430 444Right-handed alpha
Helix 13
AB4
A
452 460Right-handed alpha
Helix 14
AB5
A
478 482Right-handed 310
Helix 15
AB6
A
490 505Right-handed alpha
Helix 16
AB7
A
525 530Right-handed alpha
Helix 17
AB8
A
556 575Right-handed alpha
Helix 18
AB9
A
576 581Right-handed alpha
Helix 19
AC1
A
591 596Right-handed alpha
Helix 20
AC2
A
615 629Right-handed alpha
Helix 21
AC3
A
777 793Right-handed alpha
Helix 22
AC4
A
799 817Right-handed alpha
Helix 23
AC5
A
854 873Right-handed alpha
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There are 6 sheets in PDB entry 9J8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
23 25anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
57 61anti-parallel
Strand 4
A
124 125anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
379 383parallel
Strand 4
A
369 373anti-parallel
Strand 5
A
355 360anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
471 472anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
510 513anti-parallel
Strand 3
A
540 542parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
764 770anti-parallel
Strand 3
A
830 836anti-parallel
Strand 4
A
843 849anti-parallel
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