Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8R entry

There are 2 chains in PDB entry 9J8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 33ALA 872
B
 ARG 33ALA 872
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9J8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 56Right-handed alpha
Helix 2
AA2
A
60 71Right-handed alpha
Helix 3
AA3
A
72 102Right-handed alpha
Helix 4
AA4
A
106 125Right-handed alpha
Helix 5
AA5
A
130 141Right-handed alpha
Helix 6
AA6
A
145 174Right-handed alpha
Helix 7
AA7
A
175 184Right-handed alpha
Helix 8
AA8
A
186 211Right-handed alpha
Helix 9
AA9
A
236 261Right-handed alpha
Helix 10
AB1
A
267 285Right-handed alpha
Helix 11
AB2
A
292 302Right-handed alpha
Helix 12
AB3
A
307 323Right-handed alpha
Helix 13
AB4
A
323 345Right-handed alpha
Helix 14
AB5
A
355 377Right-handed alpha
Helix 15
AB6
A
380 391Right-handed alpha
Helix 16
AB7
A
392 419Right-handed alpha
Helix 17
AB8
A
421 444Right-handed alpha
Helix 18
AB9
A
445 462Right-handed alpha
Helix 19
AC1
A
478 500Right-handed alpha
Helix 20
AC2
A
506 512Right-handed 310
Helix 21
AC3
A
518 542Right-handed alpha
Helix 22
AC4
A
553 566Right-handed alpha
Helix 23
AC5
A
569 578Right-handed 310
Helix 24
AC6
A
610 628Right-handed alpha
Helix 25
AC7
A
638 640Right-handed 310
Helix 26
AC8
A
641 649Right-handed alpha
Helix 27
AC9
A
672 689Right-handed alpha
Helix 28
AD1
A
701 713Right-handed alpha
Helix 29
AD2
A
729 734Right-handed alpha
Helix 30
AD3
A
774 793Right-handed alpha
Helix 31
AD4
A
834 842Right-handed alpha
Helix 32
AD5
A
859 872Right-handed alpha
Helix 33
AD6
B
34 56Right-handed alpha
Helix 34
AD7
B
60 71Right-handed alpha
Helix 35
AD8
B
72 102Right-handed alpha
Helix 36
AD9
B
106 125Right-handed alpha
Helix 37
AE1
B
130 141Right-handed alpha
Helix 38
AE2
B
145 174Right-handed alpha
Helix 39
AE3
B
175 184Right-handed alpha
Helix 40
AE4
B
186 211Right-handed alpha
Helix 41
AE5
B
236 261Right-handed alpha
Helix 42
AE6
B
267 285Right-handed alpha
Helix 43
AE7
B
292 302Right-handed alpha
Helix 44
AE8
B
307 323Right-handed alpha
Helix 45
AE9
B
323 345Right-handed alpha
Helix 46
AF1
B
355 377Right-handed alpha
Helix 47
AF2
B
380 391Right-handed alpha
Helix 48
AF3
B
392 419Right-handed alpha
Helix 49
AF4
B
421 444Right-handed alpha
Helix 50
AF5
B
445 462Right-handed alpha
Helix 51
AF6
B
478 500Right-handed alpha
Helix 52
AF7
B
506 512Right-handed 310
Helix 53
AF8
B
518 542Right-handed alpha
Helix 54
AF9
B
553 566Right-handed alpha
Helix 55
AG1
B
569 578Right-handed 310
Helix 56
AG2
B
610 628Right-handed alpha
Helix 57
AG3
B
638 640Right-handed 310
Helix 58
AG4
B
641 649Right-handed alpha
Helix 59
AG5
B
672 689Right-handed alpha
Helix 60
AG6
B
701 713Right-handed alpha
Helix 61
AG7
B
729 734Right-handed alpha
Helix 62
AG8
B
774 793Right-handed alpha
Helix 63
AG9
B
834 842Right-handed alpha
Helix 64
AH1
B
859 872Right-handed alpha
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There are 6 sheets in PDB entry 9J8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
231 234anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
591 597anti-parallel
Strand 3
A
600 603anti-parallel
Strand 4
A
631 637parallel
Strand 5
A
846 855anti-parallel
Strand 6
A
650 662anti-parallel
Strand 7
A
796 803anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 695first strand
Strand 2
A
737 743anti-parallel
Strand 3
A
746 755anti-parallel
Strand 4
A
762 769anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
231 234anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 584first strand
Strand 2
B
591 597anti-parallel
Strand 3
B
600 603anti-parallel
Strand 4
B
631 637parallel
Strand 5
B
846 855anti-parallel
Strand 6
B
650 662anti-parallel
Strand 7
B
796 803anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
690 695first strand
Strand 2
B
737 743anti-parallel
Strand 3
B
746 755anti-parallel
Strand 4
B
762 769anti-parallel
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