Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J8V entry

There is 1 chain in PDB entry 9J8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 317LEU 2081
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 9J8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 328Right-handed 310
Helix 2
AA2
A
336 346Right-handed alpha
Helix 3
AA3
A
352 361Right-handed alpha
Helix 4
AA4
A
362 367Right-handed 310
Helix 5
AA5
A
372 390Right-handed alpha
Helix 6
AA6
A
397 408Right-handed alpha
Helix 7
AA7
A
409 414Right-handed alpha
Helix 8
AA8
A
414 434Right-handed alpha
Helix 9
AA9
A
439 455Right-handed alpha
Helix 10
AB1
A
488 501Right-handed alpha
Helix 11
AB2
A
511 515Right-handed 310
Helix 12
AB3
A
522 536Right-handed alpha
Helix 13
AB4
A
591 603Right-handed alpha
Helix 14
AB5
A
663 681Right-handed alpha
Helix 15
AB6
A
689 699Right-handed alpha
Helix 16
AB7
A
708 712Right-handed 310
Helix 17
AB8
A
714 729Right-handed alpha
Helix 18
AB9
A
730 752Right-handed alpha
Helix 19
AC1
A
797 804Right-handed alpha
Helix 20
AC2
A
828 837Right-handed alpha
Helix 21
AC3
A
837 853Right-handed alpha
Helix 22
AC4
A
853 863Right-handed alpha
Helix 23
AC5
A
874 893Right-handed alpha
Helix 24
AC6
A
896 906Right-handed alpha
Helix 25
AC7
A
937 954Right-handed alpha
Helix 26
AC8
A
991 1005Right-handed alpha
Helix 27
AC9
A
1012 1036Right-handed alpha
Helix 28
AD1
A
1046 1051Right-handed 310
Helix 29
AD2
A
1060 1075Right-handed alpha
Helix 30
AD3
A
1077 1089Right-handed alpha
Helix 31
AD4
A
1094 1097Right-handed 310
Helix 32
AD5
A
1098 1103Right-handed alpha
Helix 33
AD6
A
1114 1125Right-handed alpha
Helix 34
AD7
A
1136 1149Right-handed alpha
Helix 35
AD8
A
1151 1162Right-handed alpha
Helix 36
AD9
A
1166 1178Right-handed alpha
Helix 37
AE1
A
1189 1195Right-handed alpha
Helix 38
AE2
A
1197 1207Right-handed alpha
Helix 39
AE3
A
1222 1235Right-handed alpha
Helix 40
AE4
A
1241 1247Right-handed alpha
Helix 41
AE5
A
1258 1271Right-handed alpha
Helix 42
AE6
A
1300 1320Right-handed alpha
Helix 43
AE7
A
1333 1353Right-handed alpha
Helix 44
AE8
A
1378 1386Right-handed alpha
Helix 45
AE9
A
1391 1408Right-handed alpha
Helix 46
AF1
A
1414 1428Right-handed alpha
Helix 47
AF2
A
1434 1439Right-handed alpha
Helix 48
AF3
A
1460 1478Right-handed alpha
Helix 49
AF4
A
1505 1513Right-handed alpha
Helix 50
AF5
A
1517 1531Right-handed alpha
Helix 51
AF6
A
1532 1534Right-handed 310
Helix 52
AF7
A
1565 1572Right-handed alpha
Helix 53
AF8
A
1580 1598Right-handed alpha
Helix 54
AF9
A
1604 1618Right-handed alpha
Helix 55
AG1
A
1630 1637Right-handed alpha
Helix 56
AG2
A
1642 1646Right-handed 310
Helix 57
AG3
A
1647 1651Right-handed 310
Helix 58
AG4
A
1657 1664Right-handed alpha
Helix 59
AG5
A
1667 1682Right-handed alpha
Helix 60
AG6
A
1686 1695Right-handed alpha
Helix 61
AG7
A
1699 1713Right-handed alpha
Helix 62
AG8
A
1717 1733Right-handed alpha
Helix 63
AG9
A
1762 1766Right-handed 310
Helix 64
AH1
A
1770 1780Right-handed alpha
Helix 65
AH2
A
1781 1786Right-handed alpha
Helix 66
AH3
A
1787 1793Right-handed alpha
Helix 67
AH4
A
1794 1796Right-handed 310
Helix 68
AH5
A
1814 1828Right-handed alpha
Helix 69
AH6
A
1829 1833Right-handed 310
Helix 70
AH7
A
1853 1862Right-handed alpha
Helix 71
AH8
A
1874 1876Right-handed 310
Helix 72
AH9
A
1891 1903Right-handed alpha
Helix 73
AI1
A
1910 1923Right-handed alpha
Helix 74
AI2
A
1924 1936Right-handed alpha
Helix 75
AI3
A
1952 1957Right-handed alpha
Helix 76
AI4
A
1986 2005Right-handed alpha
Helix 77
AI5
A
2018 2028Right-handed alpha
Helix 78
AI6
A
2032 2043Right-handed alpha
Helix 79
AI7
A
2052 2058Right-handed alpha
Helix 80
AI8
A
2063 2068Right-handed 310
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There are 7 sheets in PDB entry 9J8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
808 813anti-parallel
Strand 3
A
817 822anti-parallel
Strand 4
A
786 793anti-parallel
Strand 5
A
767 771anti-parallel
Strand 6
A
756 760anti-parallel
Strand 7
A
584 586anti-parallel
Strand 8
A
577 579anti-parallel
Strand 9
A
572 574anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
549 552anti-parallel
Strand 3
A
1878 1881parallel
Strand 4
A
1889 1890anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1107 1109first strand
Strand 2
A
1219 1221anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1281first strand
Strand 2
A
1410 1412parallel
Strand 3
A
1446 1448anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1483 1488first strand
Strand 2
A
1499 1504anti-parallel
Strand 3
A
1359 1364anti-parallel
Strand 4
A
1544 1545anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1491 1492first strand
Strand 2
A
1495 1496anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1548 1550first strand
Strand 2
A
1555 1557anti-parallel
Strand 3
A
1560 1562anti-parallel
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