Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J8W entry

There are 12 chains in PDB entry 9J8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 36	ALA 136
B	ARG 18	GLY 103
C	LYS 10	LYS 126
D	ARG 30	LYS 126
E	VAL 36	ALA 136
F	VAL 22	GLY 103
G	LYS 10	LYS 126
H	ARG 30	LYS 126
I	A 1	T 145
J	A 1	A 94
J	G 97	T 145
L	ARG 67	LYS 427

There are 36 helices in PDB entry 9J8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	57	Right-handed alpha
Helix 2	AA2	A	64	78	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	B	26	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	95	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	28	37	Right-handed alpha
Helix 11	AB2	C	46	74	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	D	38	50	Right-handed alpha
Helix 15	AB6	D	56	85	Right-handed alpha
Helix 16	AB7	D	91	103	Right-handed alpha
Helix 17	AB8	D	104	125	Right-handed alpha
Helix 18	AB9	E	45	57	Right-handed alpha
Helix 19	AC1	E	64	80	Right-handed alpha
Helix 20	AC2	E	86	115	Right-handed alpha
Helix 21	AC3	E	121	133	Right-handed alpha
Helix 22	AC4	F	31	42	Right-handed alpha
Helix 23	AC5	F	50	77	Right-handed alpha
Helix 24	AC6	F	83	94	Right-handed alpha
Helix 25	AC7	G	17	23	Right-handed alpha
Helix 26	AC8	G	27	37	Right-handed alpha
Helix 27	AC9	G	46	74	Right-handed alpha
Helix 28	AD1	G	80	91	Right-handed alpha
Helix 29	AD2	G	91	98	Right-handed alpha
Helix 30	AD3	G	113	117	Right-handed 310
Helix 31	AD4	H	38	50	Right-handed alpha
Helix 32	AD5	H	56	85	Right-handed alpha
Helix 33	AD6	H	91	103	Right-handed alpha
Helix 34	AD7	H	104	125	Right-handed alpha
Helix 35	AD8	L	70	78	Right-handed alpha
Helix 36	AD9	L	82	99	Right-handed alpha

There are 16 sheets in PDB entry 9J8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	G	101	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	F	97	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	108	first strand
Strand 2	L	414	417	anti-parallel
Strand 3	L	407	411	anti-parallel
Strand 4	L	395	400	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	119	first strand
Strand 2	L	126	131	anti-parallel
Strand 3	L	136	140	anti-parallel
Strand 4	L	148	150	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	164	first strand
Strand 2	L	171	176	anti-parallel
Strand 3	L	180	185	anti-parallel
Strand 4	L	190	196	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	204	210	first strand
Strand 2	L	215	220	anti-parallel
Strand 3	L	226	229	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	245	250	first strand
Strand 2	L	257	262	anti-parallel
Strand 3	L	266	271	anti-parallel
Strand 4	L	283	286	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	296	first strand
Strand 2	L	302	307	anti-parallel
Strand 3	L	312	316	anti-parallel
Strand 4	L	325	326	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	343	344	first strand
Strand 2	L	350	353	anti-parallel
Strand 3	L	372	376	anti-parallel
Strand 4	L	382	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8W