Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J8Z entry

There are 5 chains in PDB entry 9J8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 4	ASN 340
C	THR 4	PHE 354
G	SER 8	GLU 63
S	ASP 1	LEU 235
A	CYS 6	SER 284

There are 29 helices in PDB entry 9J8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	25	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	C	6	32	Right-handed alpha
Helix 4	AA4	C	45	52	Right-handed alpha
Helix 5	AA5	C	207	212	Right-handed alpha
Helix 6	AA6	C	213	216	Right-handed 310
Helix 7	AA7	C	242	255	Right-handed alpha
Helix 8	AA8	C	270	281	Right-handed alpha
Helix 9	AA9	C	282	286	Right-handed 310
Helix 10	AB1	C	295	310	Right-handed alpha
Helix 11	AB2	C	329	351	Right-handed alpha
Helix 12	AB3	G	9	24	Right-handed alpha
Helix 13	AB4	G	29	45	Right-handed alpha
Helix 14	AB5	G	46	48	Right-handed 310
Helix 15	AB6	S	28	32	Right-handed 310
Helix 16	AB7	S	53	56	Right-handed 310
Helix 17	AB8	S	87	91	Right-handed 310
Helix 18	AB9	A	17	43	Right-handed alpha
Helix 19	AC1	A	50	66	Right-handed alpha
Helix 20	AC2	A	67	77	Right-handed alpha
Helix 21	AC3	A	84	99	Right-handed alpha
Helix 22	AC4	A	101	118	Right-handed alpha
Helix 23	AC5	A	122	127	Right-handed 310
Helix 24	AC6	A	128	152	Right-handed alpha
Helix 25	AC7	A	177	205	Right-handed alpha
Helix 26	AC8	A	208	212	Right-handed 310
Helix 27	AC9	A	213	245	Right-handed alpha
Helix 28	AD1	A	246	250	Right-handed 310
Helix 29	AD2	A	255	282	Right-handed alpha

There are 13 sheets in PDB entry 9J8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	34	38	parallel
Strand 4	C	220	226	parallel
Strand 5	C	264	269	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	19	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	94	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	94	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	98	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	183	first strand
Strand 2	S	174	178	anti-parallel
Strand 3	S	162	167	anti-parallel
Strand 4	S	213	219	anti-parallel
Strand 5	S	231	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J8Z