Analysis of interatomic Contacts of Structural Units in PDB entry:
9J92

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J92 entry

There are 8 chains in PDB entry 9J92 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 387	SER 818
D	ARG 389	GLU 817
C	GLN 387	SER 818
B	ARG 389	GLU 817
E	PHE 3	SER 158
H	PHE 3	SER 158
G	PHE 3	SER 158
F	PHE 3	SER 158

There are 78 helices in PDB entry 9J92. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	412	415	Right-handed 310
Helix 2	AA2	A	419	433	Right-handed alpha
Helix 3	AA3	A	458	466	Right-handed alpha
Helix 4	AA4	A	478	483	Right-handed alpha
Helix 5	AA5	A	518	543	Right-handed alpha
Helix 6	AA6	A	569	581	Right-handed alpha
Helix 7	AA7	A	591	625	Right-handed alpha
Helix 8	AA8	A	631	638	Right-handed alpha
Helix 9	AA9	A	649	657	Right-handed alpha
Helix 10	AB1	A	662	672	Right-handed alpha
Helix 11	AB2	A	682	692	Right-handed alpha
Helix 12	AB3	A	703	708	Right-handed alpha
Helix 13	AB4	A	739	750	Right-handed alpha
Helix 14	AB5	A	753	764	Right-handed alpha
Helix 15	AB6	A	789	818	Right-handed alpha
Helix 16	AB7	D	419	433	Right-handed alpha
Helix 17	AB8	D	460	465	Right-handed alpha
Helix 18	AB9	D	478	482	Right-handed 310
Helix 19	AC1	D	518	543	Right-handed alpha
Helix 20	AC2	D	569	581	Right-handed alpha
Helix 21	AC3	D	591	620	Right-handed alpha
Helix 22	AC4	D	631	636	Right-handed alpha
Helix 23	AC5	D	649	658	Right-handed alpha
Helix 24	AC6	D	661	671	Right-handed alpha
Helix 25	AC7	D	687	691	Right-handed 310
Helix 26	AC8	D	702	710	Right-handed alpha
Helix 27	AC9	D	738	753	Right-handed alpha
Helix 28	AD1	D	756	765	Right-handed alpha
Helix 29	AD2	D	789	817	Right-handed alpha
Helix 30	AD3	C	419	433	Right-handed alpha
Helix 31	AD4	C	457	465	Right-handed alpha
Helix 32	AD5	C	478	483	Right-handed alpha
Helix 33	AD6	C	518	541	Right-handed alpha
Helix 34	AD7	C	569	581	Right-handed alpha
Helix 35	AD8	C	591	625	Right-handed alpha
Helix 36	AD9	C	631	638	Right-handed alpha
Helix 37	AE1	C	649	658	Right-handed alpha
Helix 38	AE2	C	661	672	Right-handed alpha
Helix 39	AE3	C	681	692	Right-handed alpha
Helix 40	AE4	C	703	708	Right-handed alpha
Helix 41	AE5	C	740	745	Right-handed alpha
Helix 42	AE6	C	748	753	Right-handed alpha
Helix 43	AE7	C	754	764	Right-handed alpha
Helix 44	AE8	C	789	815	Right-handed alpha
Helix 45	AE9	B	419	433	Right-handed alpha
Helix 46	AF1	B	460	465	Right-handed alpha
Helix 47	AF2	B	478	483	Right-handed alpha
Helix 48	AF3	B	520	543	Right-handed alpha
Helix 49	AF4	B	569	581	Right-handed alpha
Helix 50	AF5	B	593	620	Right-handed alpha
Helix 51	AF6	B	652	657	Right-handed alpha
Helix 52	AF7	B	660	673	Right-handed alpha
Helix 53	AF8	B	686	692	Right-handed alpha
Helix 54	AF9	B	702	710	Right-handed alpha
Helix 55	AG1	B	738	753	Right-handed alpha
Helix 56	AG2	B	756	765	Right-handed alpha
Helix 57	AG3	B	784	787	Right-handed 310
Helix 58	AG4	B	788	815	Right-handed alpha
Helix 59	AG5	E	4	34	Right-handed alpha
Helix 60	AG6	E	58	67	Right-handed alpha
Helix 61	AG7	E	68	86	Right-handed alpha
Helix 62	AG8	E	87	108	Right-handed alpha
Helix 63	AG9	E	128	158	Right-handed alpha
Helix 64	AH1	H	4	34	Right-handed alpha
Helix 65	AH2	H	58	67	Right-handed alpha
Helix 66	AH3	H	68	86	Right-handed alpha
Helix 67	AH4	H	87	108	Right-handed alpha
Helix 68	AH5	H	128	158	Right-handed alpha
Helix 69	AH6	G	4	34	Right-handed alpha
Helix 70	AH7	G	58	67	Right-handed alpha
Helix 71	AH8	G	68	86	Right-handed alpha
Helix 72	AH9	G	87	108	Right-handed alpha
Helix 73	AI1	G	128	158	Right-handed alpha
Helix 74	AI2	F	4	34	Right-handed alpha
Helix 75	AI3	F	58	67	Right-handed alpha
Helix 76	AI4	F	68	86	Right-handed alpha
Helix 77	AI5	F	87	108	Right-handed alpha
Helix 78	AI6	F	128	158	Right-handed alpha

There are 18 sheets in PDB entry 9J92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	436	438	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	456	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	726	727	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	716	719	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	698	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	395	first strand
Strand 2	D	436	440	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	726	728	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	644	first strand
Strand 2	D	696	701	parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	716	718	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	472	first strand
Strand 2	C	730	731	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	501	first strand
Strand 2	C	716	719	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	698	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	395	first strand
Strand 2	B	436	440	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	731	733	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	726	728	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	696	701	parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	716	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J92

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J92