Analysis of interatomic Contacts of Structural Units in PDB entry:
9J93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J93 entry

There are 5 chains in PDB entry 9J93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 3	ILE 379
A	ASN 2	ALA 374
H	UNK 2	UNK 218
L	UNK 1	UNK 216
C	GLU 1	ARG 246

There are 30 helices in PDB entry 9J93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	18	34	Right-handed alpha
Helix 2	AA2	B	55	69	Right-handed alpha
Helix 3	AA3	B	82	91	Right-handed alpha
Helix 4	AA4	B	118	130	Right-handed alpha
Helix 5	AA5	B	144	158	Right-handed alpha
Helix 6	AA6	B	170	185	Right-handed alpha
Helix 7	AA7	B	194	209	Right-handed alpha
Helix 8	AA8	B	230	236	Right-handed alpha
Helix 9	AA9	B	251	259	Right-handed alpha
Helix 10	AB1	B	275	298	Right-handed alpha
Helix 11	AB2	B	321	330	Right-handed alpha
Helix 12	AB3	A	18	28	Right-handed alpha
Helix 13	AB4	A	29	31	Right-handed 310
Helix 14	AB5	A	50	63	Right-handed alpha
Helix 15	AB6	A	75	87	Right-handed alpha
Helix 16	AB7	A	112	122	Right-handed alpha
Helix 17	AB8	A	137	151	Right-handed alpha
Helix 18	AB9	A	163	169	Right-handed alpha
Helix 19	AC1	A	187	192	Right-handed alpha
Helix 20	AC2	A	222	227	Right-handed alpha
Helix 21	AC3	A	244	253	Right-handed alpha
Helix 22	AC4	A	270	293	Right-handed alpha
Helix 23	AC5	A	316	325	Right-handed alpha
Helix 24	AC6	H	131	136	Right-handed alpha
Helix 25	AC7	H	191	196	Right-handed alpha
Helix 26	AC8	L	79	83	Right-handed 310
Helix 27	AC9	L	123	129	Right-handed alpha
Helix 28	AD1	L	184	191	Right-handed alpha
Helix 29	AD2	C	73	77	Right-handed 310
Helix 30	AD3	C	87	91	Right-handed 310

There are 24 sheets in PDB entry 9J93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	43	45	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	73	76	parallel
Strand 3	B	96	99	parallel
Strand 4	B	111	113	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	164	165	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	238	243	parallel
Strand 3	B	353	360	anti-parallel
Strand 4	B	363	371	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	339	342	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	6	12	parallel
Strand 3	A	66	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	104	106	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	131	first strand
Strand 2	A	153	158	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	236	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	359	365	anti-parallel
Strand 4	A	369	371	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	334	337	anti-parallel
Strand 3	A	343	344	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	79	81	anti-parallel
Strand 4	H	72	74	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	19	first strand
Strand 2	H	83	84	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	98	100	anti-parallel
Strand 3	H	104	106	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	40	41	anti-parallel
Strand 3	H	94	95	anti-parallel
Strand 4	H	111	112	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	127	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	127	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	158	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	211	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	207	212	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	81	83	anti-parallel
Strand 3	C	68	70	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	36	39	anti-parallel
Strand 4	C	93	96	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	156	157	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	223	227	anti-parallel
Strand 3	C	236	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J93

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J93