Analysis of interatomic Contacts of Structural Units in PDB entry:
9J95

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J95 entry

There are 8 chains in PDB entry 9J95 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 390	ARG 815
B	THR 390	ARG 815
C	THR 390	ARG 815
D	THR 390	ARG 815
E	ALA 2	SER 158
F	ALA 2	SER 158
G	ALA 2	SER 158
H	ALA 2	SER 158

There are 80 helices in PDB entry 9J95. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	412	415	Right-handed 310
Helix 2	AA2	A	419	433	Right-handed alpha
Helix 3	AA3	A	458	465	Right-handed alpha
Helix 4	AA4	A	478	484	Right-handed alpha
Helix 5	AA5	A	518	543	Right-handed alpha
Helix 6	AA6	A	568	581	Right-handed alpha
Helix 7	AA7	A	591	626	Right-handed alpha
Helix 8	AA8	A	631	637	Right-handed alpha
Helix 9	AA9	A	649	658	Right-handed alpha
Helix 10	AB1	A	660	672	Right-handed alpha
Helix 11	AB2	A	681	692	Right-handed alpha
Helix 12	AB3	A	702	710	Right-handed alpha
Helix 13	AB4	A	738	753	Right-handed alpha
Helix 14	AB5	A	753	764	Right-handed alpha
Helix 15	AB6	A	784	815	Right-handed alpha
Helix 16	AB7	B	407	411	Right-handed 310
Helix 17	AB8	B	412	415	Right-handed 310
Helix 18	AB9	B	419	433	Right-handed alpha
Helix 19	AC1	B	457	465	Right-handed alpha
Helix 20	AC2	B	478	483	Right-handed alpha
Helix 21	AC3	B	518	543	Right-handed alpha
Helix 22	AC4	B	568	581	Right-handed alpha
Helix 23	AC5	B	591	626	Right-handed alpha
Helix 24	AC6	B	631	638	Right-handed alpha
Helix 25	AC7	B	649	657	Right-handed alpha
Helix 26	AC8	B	660	673	Right-handed alpha
Helix 27	AC9	B	681	693	Right-handed alpha
Helix 28	AD1	B	702	710	Right-handed alpha
Helix 29	AD2	B	738	753	Right-handed alpha
Helix 30	AD3	B	753	764	Right-handed alpha
Helix 31	AD4	B	784	815	Right-handed alpha
Helix 32	AD5	C	407	411	Right-handed 310
Helix 33	AD6	C	412	415	Right-handed 310
Helix 34	AD7	C	419	433	Right-handed alpha
Helix 35	AD8	C	457	465	Right-handed alpha
Helix 36	AD9	C	478	484	Right-handed alpha
Helix 37	AE1	C	511	515	Right-handed 310
Helix 38	AE2	C	518	543	Right-handed alpha
Helix 39	AE3	C	568	581	Right-handed alpha
Helix 40	AE4	C	591	626	Right-handed alpha
Helix 41	AE5	C	631	637	Right-handed alpha
Helix 42	AE6	C	649	658	Right-handed alpha
Helix 43	AE7	C	660	672	Right-handed alpha
Helix 44	AE8	C	681	692	Right-handed alpha
Helix 45	AE9	C	702	710	Right-handed alpha
Helix 46	AF1	C	738	753	Right-handed alpha
Helix 47	AF2	C	753	764	Right-handed alpha
Helix 48	AF3	C	784	815	Right-handed alpha
Helix 49	AF4	D	407	411	Right-handed 310
Helix 50	AF5	D	412	415	Right-handed 310
Helix 51	AF6	D	419	433	Right-handed alpha
Helix 52	AF7	D	457	465	Right-handed alpha
Helix 53	AF8	D	478	484	Right-handed alpha
Helix 54	AF9	D	518	543	Right-handed alpha
Helix 55	AG1	D	568	581	Right-handed alpha
Helix 56	AG2	D	591	626	Right-handed alpha
Helix 57	AG3	D	631	638	Right-handed alpha
Helix 58	AG4	D	649	658	Right-handed alpha
Helix 59	AG5	D	660	673	Right-handed alpha
Helix 60	AG6	D	681	693	Right-handed alpha
Helix 61	AG7	D	702	710	Right-handed alpha
Helix 62	AG8	D	738	753	Right-handed alpha
Helix 63	AG9	D	753	764	Right-handed alpha
Helix 64	AH1	D	785	815	Right-handed alpha
Helix 65	AH2	E	5	37	Right-handed alpha
Helix 66	AH3	E	57	84	Right-handed alpha
Helix 67	AH4	E	87	108	Right-handed alpha
Helix 68	AH5	E	128	158	Right-handed alpha
Helix 69	AH6	F	6	37	Right-handed alpha
Helix 70	AH7	F	57	86	Right-handed alpha
Helix 71	AH8	F	87	108	Right-handed alpha
Helix 72	AH9	F	128	158	Right-handed alpha
Helix 73	AI1	G	5	37	Right-handed alpha
Helix 74	AI2	G	57	84	Right-handed alpha
Helix 75	AI3	G	87	108	Right-handed alpha
Helix 76	AI4	G	128	158	Right-handed alpha
Helix 77	AI5	H	6	37	Right-handed alpha
Helix 78	AI6	H	58	84	Right-handed alpha
Helix 79	AI7	H	87	108	Right-handed alpha
Helix 80	AI8	H	128	157	Right-handed alpha

There are 20 sheets in PDB entry 9J95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	436	440	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	455	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	731	733	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	726	727	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	718	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	391	395	parallel
Strand 3	B	470	471	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	731	733	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	726	728	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	696	701	parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	716	718	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	440	first strand
Strand 2	C	391	395	parallel
Strand 3	C	470	471	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	494	first strand
Strand 2	C	726	733	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	439	first strand
Strand 2	D	391	394	parallel
Strand 3	D	470	471	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	487	first strand
Strand 2	D	731	733	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	726	728	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	698	701	first strand
Strand 2	D	496	501	anti-parallel
Strand 3	D	716	718	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J95

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J95