Analysis of interatomic Contacts of Structural Units in PDB entry:
9J98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J98 entry

There are 2 chains in PDB entry 9J98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 228VAL 626
B
 PRO 228VAL 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 9J98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 258Right-handed alpha
Helix 2
AA2
A
265 294Right-handed alpha
Helix 3
AA3
A
298 304Right-handed alpha
Helix 4
AA4
A
312 336Right-handed alpha
Helix 5
AA5
A
346 358Right-handed alpha
Helix 6
AA6
A
367 382Right-handed alpha
Helix 7
AA7
A
390 402Right-handed alpha
Helix 8
AA8
A
403 420Right-handed alpha
Helix 9
AA9
A
446 453Right-handed alpha
Helix 10
AB1
A
454 471Right-handed alpha
Helix 11
AB2
A
473 503Right-handed alpha
Helix 12
AB3
A
506 531Right-handed alpha
Helix 13
AB4
A
541 545Right-handed 310
Helix 14
AB5
A
556 569Right-handed alpha
Helix 15
AB6
A
572 580Right-handed alpha
Helix 16
AB7
A
587 619Right-handed alpha
Helix 17
AB8
B
232 258Right-handed alpha
Helix 18
AB9
B
265 294Right-handed alpha
Helix 19
AC1
B
298 304Right-handed alpha
Helix 20
AC2
B
312 336Right-handed alpha
Helix 21
AC3
B
346 358Right-handed alpha
Helix 22
AC4
B
367 382Right-handed alpha
Helix 23
AC5
B
390 402Right-handed alpha
Helix 24
AC6
B
403 420Right-handed alpha
Helix 25
AC7
B
446 453Right-handed alpha
Helix 26
AC8
B
454 471Right-handed alpha
Helix 27
AC9
B
473 503Right-handed alpha
Helix 28
AD1
B
506 531Right-handed alpha
Helix 29
AD2
B
541 545Right-handed 310
Helix 30
AD3
B
556 569Right-handed alpha
Helix 31
AD4
B
572 580Right-handed alpha
Helix 32
AD5
B
587 596Right-handed alpha
Helix 33
AD6
B
596 619Right-handed alpha
Back to top of page
There are no sheets in PDB entry 9J98
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il