Analysis of interatomic Contacts of Structural Units in PDB entry:
9J99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J99 entry

There are 10 chains in PDB entry 9J99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 49GLN 382
B
 PHE 87ASP 135
C
 SER 10TRP 49
D
 PHE 24LEU 61
E
 LEU 21VAL 60
I
 HIS 49GLN 382
J
 PHE 87ASP 135
K
 SER 10TRP 49
L
 PHE 24LEU 61
M
 SER 18VAL 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9J99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 56Right-handed alpha
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
364 373Right-handed alpha
Helix 4
AA4
B
88 135Right-handed alpha
Helix 5
AA5
C
11 49Right-handed alpha
Helix 6
AA6
D
25 29Right-handed alpha
Helix 7
AA7
D
30 50Right-handed alpha
Helix 8
AA8
D
54 58Right-handed 310
Helix 9
AA9
E
24 30Right-handed 310
Helix 10
AB1
E
31 42Right-handed alpha
Helix 11
AB2
E
49 54Right-handed alpha
Helix 12
AB3
I
51 56Right-handed alpha
Helix 13
AB4
I
67 72Right-handed alpha
Helix 14
AB5
I
364 373Right-handed alpha
Helix 15
AB6
I
375 379Right-handed 310
Helix 16
AB7
J
88 135Right-handed alpha
Helix 17
AB8
K
11 49Right-handed alpha
Helix 18
AB9
L
25 29Right-handed alpha
Helix 19
AC1
L
30 51Right-handed alpha
Helix 20
AC2
L
52 57Right-handed alpha
Helix 21
AC3
M
19 24Right-handed alpha
Helix 22
AC4
M
27 30Right-handed 310
Helix 23
AC5
M
31 42Right-handed alpha
Helix 24
AC6
M
49 55Right-handed alpha
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There are 2 sheets in PDB entry 9J99. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 91first strand
Strand 2
A
98 106anti-parallel
Strand 3
A
114 122anti-parallel
Strand 4
A
125 132anti-parallel
Strand 5
A
137 146anti-parallel
Strand 6
A
149 157anti-parallel
Strand 7
A
164 172anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
193 204anti-parallel
Strand 10
A
209 219anti-parallel
Strand 11
A
227 237anti-parallel
Strand 12
A
243 249anti-parallel
Strand 13
A
255 262anti-parallel
Strand 14
A
267 278anti-parallel
Strand 15
A
296 308anti-parallel
Strand 16
A
312 319anti-parallel
Strand 17
A
323 333anti-parallel
Strand 18
A
336 345anti-parallel
Strand 19
A
350 362anti-parallel
Strand 20
A
83 91parallel
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
83 91first strand
Strand 2
I
98 106anti-parallel
Strand 3
I
114 122anti-parallel
Strand 4
I
125 132anti-parallel
Strand 5
I
137 144anti-parallel
Strand 6
I
149 157anti-parallel
Strand 7
I
164 172anti-parallel
Strand 8
I
176 187anti-parallel
Strand 9
I
193 204anti-parallel
Strand 10
I
209 219anti-parallel
Strand 11
I
229 237anti-parallel
Strand 12
I
243 249anti-parallel
Strand 13
I
254 262anti-parallel
Strand 14
I
267 279anti-parallel
Strand 15
I
295 308anti-parallel
Strand 16
I
312 319anti-parallel
Strand 17
I
323 333anti-parallel
Strand 18
I
336 345anti-parallel
Strand 19
I
350 362anti-parallel
Strand 20
I
83 91parallel
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