Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J9A entry

There is 1 chain in PDB entry 9J9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3SER 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 9J9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
17 21Right-handed 310
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
64 69Right-handed alpha
Helix 5
AA5
A
70 72Right-handed 310
Helix 6
AA6
A
74 76Right-handed 310
Helix 7
AA7
A
128 133Right-handed alpha
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
A
235 247Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9J9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
165 173anti-parallel
Strand 3
A
178 180anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
199 207anti-parallel
Strand 6
A
191 193anti-parallel
Strand 7
A
149 154anti-parallel
Strand 8
A
165 173anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
116 120anti-parallel
Strand 5
A
99 105anti-parallel
Strand 6
A
78 82anti-parallel
Strand 7
A
40 45anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
92 93anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
233 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il