Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J9F entry

There is 1 chain in PDB entry 9J9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASP 1526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9J9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
36 60Right-handed alpha
Helix 4
AA4
A
68 99Right-handed alpha
Helix 5
AA5
A
104 130Right-handed alpha
Helix 6
AA6
A
135 162Right-handed alpha
Helix 7
AA7
A
168 190Right-handed alpha
Helix 8
AA8
A
214 220Right-handed alpha
Helix 9
AA9
A
221 223Right-handed 310
Helix 10
AB1
A
224 234Right-handed alpha
Helix 11
AB2
A
245 252Right-handed 310
Helix 12
AB3
A
253 269Right-handed alpha
Helix 13
AB4
A
312 322Right-handed alpha
Helix 14
AB5
A
325 339Right-handed alpha
Helix 15
AB6
A
340 355Right-handed alpha
Helix 16
AB7
A
361 408Right-handed alpha
Helix 17
AB8
A
411 417Right-handed alpha
Helix 18
AB9
A
419 429Right-handed alpha
Helix 19
AC1
A
429 439Right-handed alpha
Helix 20
AC2
A
442 463Right-handed alpha
Helix 21
AC3
A
466 511Right-handed alpha
Helix 22
AC4
A
511 519Right-handed alpha
Helix 23
AC5
A
520 571Right-handed alpha
Helix 24
AC6
A
584 621Right-handed alpha
Helix 25
AC7
A
683 692Right-handed alpha
Helix 26
AC8
A
721 728Right-handed alpha
Helix 27
AC9
A
733 744Right-handed alpha
Helix 28
AD1
A
746 751Right-handed alpha
Helix 29
AD2
A
755 759Right-handed 310
Helix 30
AD3
A
769 785Right-handed alpha
Helix 31
AD4
A
794 798Right-handed 310
Helix 32
AD5
A
799 811Right-handed alpha
Helix 33
AD6
A
831 835Right-handed 310
Helix 34
AD7
A
851 858Right-handed alpha
Helix 35
AD8
A
860 870Right-handed alpha
Helix 36
AD9
A
959 970Right-handed alpha
Helix 37
AE1
A
970 1000Right-handed alpha
Helix 38
AE2
A
1010 1058Right-handed alpha
Helix 39
AE3
A
1059 1066Right-handed alpha
Helix 40
AE4
A
1067 1085Right-handed alpha
Helix 41
AE5
A
1085 1111Right-handed alpha
Helix 42
AE6
A
1117 1122Right-handed alpha
Helix 43
AE7
A
1128 1146Right-handed alpha
Helix 44
AE8
A
1147 1160Right-handed alpha
Helix 45
AE9
A
1160 1167Right-handed alpha
Helix 46
AF1
A
1169 1220Right-handed alpha
Helix 47
AF2
A
1227 1257Right-handed alpha
Helix 48
AF3
A
1257 1263Right-handed alpha
Helix 49
AF4
A
1264 1268Right-handed 310
Helix 50
AF5
A
1331 1340Right-handed alpha
Helix 51
AF6
A
1358 1360Right-handed 310
Helix 52
AF7
A
1361 1367Right-handed alpha
Helix 53
AF8
A
1382 1388Right-handed alpha
Helix 54
AF9
A
1394 1405Right-handed alpha
Helix 55
AG1
A
1407 1413Right-handed alpha
Helix 56
AG2
A
1423 1427Right-handed 310
Helix 57
AG3
A
1430 1446Right-handed alpha
Helix 58
AG4
A
1454 1458Right-handed 310
Helix 59
AG5
A
1460 1474Right-handed alpha
Helix 60
AG6
A
1486 1491Right-handed alpha
Helix 61
AG7
A
1509 1516Right-handed alpha
Helix 62
AG8
A
1518 1526Right-handed alpha
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There are 5 sheets in PDB entry 9J9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
702 705parallel
Strand 3
A
644 646anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
649 652anti-parallel
Strand 3
A
696 699anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 710first strand
Strand 2
A
788 792parallel
Strand 3
A
821 825parallel
Strand 4
A
674 677parallel
Strand 5
A
837 842parallel
Strand 6
A
845 848anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1311 1316first strand
Strand 2
A
1292 1296anti-parallel
Strand 3
A
1350 1352anti-parallel
Strand 4
A
1355 1356anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1449 1450first strand
Strand 2
A
1479 1483parallel
Strand 3
A
1321 1324parallel
Strand 4
A
1495 1500parallel
Strand 5
A
1503 1506anti-parallel
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