Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J9G entry

There is 1 chain in PDB entry 9J9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9J9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
30 59Right-handed alpha
Helix 4
AA4
A
68 99Right-handed alpha
Helix 5
AA5
A
103 131Right-handed alpha
Helix 6
AA6
A
135 162Right-handed alpha
Helix 7
AA7
A
168 190Right-handed alpha
Helix 8
AA8
A
199 203Right-handed 310
Helix 9
AA9
A
208 213Right-handed 310
Helix 10
AB1
A
214 220Right-handed alpha
Helix 11
AB2
A
221 223Right-handed 310
Helix 12
AB3
A
224 234Right-handed alpha
Helix 13
AB4
A
237 241Right-handed 310
Helix 14
AB5
A
249 269Right-handed alpha
Helix 15
AB6
A
312 322Right-handed alpha
Helix 16
AB7
A
325 340Right-handed alpha
Helix 17
AB8
A
340 355Right-handed alpha
Helix 18
AB9
A
360 408Right-handed alpha
Helix 19
AC1
A
411 418Right-handed alpha
Helix 20
AC2
A
419 429Right-handed alpha
Helix 21
AC3
A
431 438Right-handed alpha
Helix 22
AC4
A
439 441Right-handed 310
Helix 23
AC5
A
442 463Right-handed alpha
Helix 24
AC6
A
466 509Right-handed alpha
Helix 25
AC7
A
511 519Right-handed alpha
Helix 26
AC8
A
520 572Right-handed alpha
Helix 27
AC9
A
578 598Right-handed alpha
Helix 28
AD1
A
598 621Right-handed alpha
Helix 29
AD2
A
626 630Right-handed 310
Helix 30
AD3
A
683 685Right-handed 310
Helix 31
AD4
A
686 692Right-handed alpha
Helix 32
AD5
A
721 728Right-handed alpha
Helix 33
AD6
A
733 744Right-handed alpha
Helix 34
AD7
A
746 753Right-handed alpha
Helix 35
AD8
A
755 759Right-handed 310
Helix 36
AD9
A
769 785Right-handed alpha
Helix 37
AE1
A
799 810Right-handed alpha
Helix 38
AE2
A
851 859Right-handed alpha
Helix 39
AE3
A
860 868Right-handed alpha
Helix 40
AE4
A
958 970Right-handed alpha
Helix 41
AE5
A
970 1000Right-handed alpha
Helix 42
AE6
A
1010 1058Right-handed alpha
Helix 43
AE7
A
1059 1066Right-handed alpha
Helix 44
AE8
A
1067 1085Right-handed alpha
Helix 45
AE9
A
1085 1111Right-handed alpha
Helix 46
AF1
A
1113 1122Right-handed alpha
Helix 47
AF2
A
1128 1160Right-handed alpha
Helix 48
AF3
A
1160 1168Right-handed alpha
Helix 49
AF4
A
1169 1220Right-handed alpha
Helix 50
AF5
A
1227 1264Right-handed alpha
Helix 51
AF6
A
1265 1268Right-handed 310
Helix 52
AF7
A
1331 1340Right-handed alpha
Helix 53
AF8
A
1362 1367Right-handed alpha
Helix 54
AF9
A
1383 1388Right-handed alpha
Helix 55
AG1
A
1394 1405Right-handed alpha
Helix 56
AG2
A
1407 1414Right-handed alpha
Helix 57
AG3
A
1423 1427Right-handed 310
Helix 58
AG4
A
1430 1445Right-handed alpha
Helix 59
AG5
A
1454 1458Right-handed 310
Helix 60
AG6
A
1462 1474Right-handed alpha
Helix 61
AG7
A
1486 1490Right-handed 310
Helix 62
AG8
A
1509 1516Right-handed alpha
Helix 63
AG9
A
1518 1526Right-handed alpha
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There are 7 sheets in PDB entry 9J9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
696 705parallel
Strand 3
A
642 652anti-parallel
Strand 4
A
661 664anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
696 705parallel
Strand 3
A
642 652anti-parallel
Strand 4
A
667 669anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
788 791parallel
Strand 3
A
821 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 841parallel
Strand 6
A
846 850anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1316first strand
Strand 2
A
1292 1299anti-parallel
Strand 3
A
1347 1349anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1322 1325first strand
Strand 2
A
1495 1500parallel
Strand 3
A
1503 1508anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1381 1382first strand
Strand 2
A
1421 1422anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1449 1450first strand
Strand 2
A
1479 1480parallel
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