Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J9P entry

There is 1 chain in PDB entry 9J9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9J9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 110Right-handed alpha
Helix 2
AA2
A
143 147Right-handed 310
Helix 3
AA3
A
197 202Right-handed alpha
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There are 2 sheets in PDB entry 9J9P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
36 37first strand
Strand 3
A
40 50first strand
Strand 4
A
55 66anti-parallel
Strand 5
A
80 90anti-parallel
Strand 6
A
94 102anti-parallel
Strand 7
A
132 141anti-parallel
Strand 8
A
151 158anti-parallel
Strand 9
A
173 180anti-parallel
Strand 10
A
185 194anti-parallel
Strand 11
A
211 222anti-parallel
Strand 12
A
225 235anti-parallel
Strand 13
A
253 263anti-parallel
Strand 14
A
269 283anti-parallel
Strand 15
A
287 302anti-parallel
Strand 16
A
307 316anti-parallel
Strand 17
A
331 340anti-parallel
Strand 18
A
9 23anti-parallel
Strand 19
A
36 37anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
250 251anti-parallel
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