Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J9W entry

There are 2 chains in PDB entry 9J9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1PRO 156
B
 LYS 19ALA 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9J9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
8 10Right-handed 310
Helix 3
AA3
A
16 26Right-handed alpha
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
146 152Right-handed alpha
Helix 7
AA7
B
48 66Right-handed alpha
Helix 8
AA8
B
71 85Right-handed alpha
Helix 9
AA9
B
92 97Right-handed alpha
Helix 10
AB1
B
102 106Right-handed 310
Helix 11
AB2
B
107 117Right-handed alpha
Helix 12
AB3
B
117 132Right-handed alpha
Helix 13
AB4
B
140 154Right-handed alpha
Helix 14
AB5
B
155 168Right-handed alpha
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There are 2 sheets in PDB entry 9J9W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
A
118 123anti-parallel
Strand 7
A
111 114anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
42 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il