Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J9Z entry

There are 4 chains in PDB entry 9J9Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213
A	TYR 5	GLU 593

There are 33 helices in PDB entry 9J9Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	90	94	Right-handed 310
Helix 2	AA2	H	107	112	Right-handed alpha
Helix 3	AA3	H	170	172	Right-handed 310
Helix 4	AA4	L	80	84	Right-handed 310
Helix 5	AA5	L	94	98	Right-handed 310
Helix 6	AA6	L	126	129	Right-handed 310
Helix 7	AA7	L	185	189	Right-handed alpha
Helix 8	AA8	A	6	11	Right-handed alpha
Helix 9	AA9	A	11	32	Right-handed alpha
Helix 10	AB1	A	32	42	Right-handed alpha
Helix 11	AB2	A	53	61	Right-handed alpha
Helix 12	AB3	A	61	72	Right-handed alpha
Helix 13	AB4	A	78	101	Right-handed alpha
Helix 14	AB5	A	109	136	Right-handed alpha
Helix 15	AB6	A	140	162	Right-handed alpha
Helix 16	AB7	A	162	169	Right-handed alpha
Helix 17	AB8	A	171	194	Right-handed alpha
Helix 18	AB9	A	200	216	Right-handed alpha
Helix 19	AC1	A	223	240	Right-handed alpha
Helix 20	AC2	A	253	279	Right-handed alpha
Helix 21	AC3	A	282	297	Right-handed alpha
Helix 22	AC4	A	299	303	Right-handed 310
Helix 23	AC5	A	311	324	Right-handed alpha
Helix 24	AC6	A	326	337	Right-handed alpha
Helix 25	AC7	A	338	354	Right-handed alpha
Helix 26	AC8	A	359	389	Right-handed alpha
Helix 27	AC9	A	390	415	Right-handed alpha
Helix 28	AD1	A	418	448	Right-handed alpha
Helix 29	AD2	A	452	483	Right-handed alpha
Helix 30	AD3	A	483	505	Right-handed alpha
Helix 31	AD4	A	505	516	Right-handed alpha
Helix 32	AD5	A	526	555	Right-handed alpha
Helix 33	AD6	A	561	593	Right-handed alpha

There are 11 sheets in PDB entry 9J9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	102	anti-parallel
Strand 5	H	121	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	138	first strand
Strand 2	H	149	155	anti-parallel
Strand 3	H	193	199	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	219	224	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	184	first strand
Strand 2	H	190	191	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	93	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	86	91	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	139	anti-parallel
Strand 3	L	177	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	150	first strand
Strand 2	L	196	199	anti-parallel
Strand 3	L	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J9Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J9Z