Analysis of interatomic Contacts of Structural Units in PDB entry:
9JA3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JA3 entry

There are 4 chains in PDB entry 9JA3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	ALA 1235
B	ALA 29	LYS 319
T	A -12	T 13
P	G -19	C 1

There are 48 helices in PDB entry 9JA3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	158	163	Right-handed alpha
Helix 3	AA3	A	169	174	Right-handed alpha
Helix 4	AA4	A	209	216	Right-handed alpha
Helix 5	AA5	A	220	234	Right-handed alpha
Helix 6	AA6	A	244	246	Right-handed 310
Helix 7	AA7	A	276	286	Right-handed alpha
Helix 8	AA8	A	298	307	Right-handed alpha
Helix 9	AA9	A	331	335	Right-handed 310
Helix 10	AB1	A	420	430	Right-handed alpha
Helix 11	AB2	A	442	458	Right-handed alpha
Helix 12	AB3	A	470	482	Right-handed alpha
Helix 13	AB4	A	525	531	Right-handed alpha
Helix 14	AB5	A	539	547	Right-handed alpha
Helix 15	AB6	A	559	567	Right-handed alpha
Helix 16	AB7	A	567	593	Right-handed alpha
Helix 17	AB8	A	593	606	Right-handed alpha
Helix 18	AB9	A	608	615	Right-handed alpha
Helix 19	AC1	A	617	632	Right-handed alpha
Helix 20	AC2	A	720	730	Right-handed alpha
Helix 21	AC3	A	772	790	Right-handed alpha
Helix 22	AC4	A	799	822	Right-handed alpha
Helix 23	AC5	A	830	856	Right-handed alpha
Helix 24	AC6	A	860	866	Right-handed alpha
Helix 25	AC7	A	867	871	Right-handed 310
Helix 26	AC8	A	898	902	Right-handed 310
Helix 27	AC9	A	903	918	Right-handed alpha
Helix 28	AD1	A	955	959	Right-handed 310
Helix 29	AD2	A	963	980	Right-handed alpha
Helix 30	AD3	A	980	991	Right-handed alpha
Helix 31	AD4	A	994	999	Right-handed alpha
Helix 32	AD5	A	1008	1022	Right-handed alpha
Helix 33	AD6	A	1027	1032	Right-handed 310
Helix 34	AD7	A	1040	1044	Right-handed 310
Helix 35	AD8	A	1051	1061	Right-handed alpha
Helix 36	AD9	A	1080	1095	Right-handed alpha
Helix 37	AE1	A	1145	1153	Right-handed alpha
Helix 38	AE2	A	1157	1174	Right-handed alpha
Helix 39	AE3	A	1175	1178	Right-handed 310
Helix 40	AE4	A	1180	1192	Right-handed alpha
Helix 41	AE5	A	1202	1209	Right-handed alpha
Helix 42	AE6	A	1221	1235	Right-handed alpha
Helix 43	AE7	B	36	48	Right-handed alpha
Helix 44	AE8	B	84	86	Right-handed 310
Helix 45	AE9	B	107	112	Right-handed 310
Helix 46	AF1	B	181	183	Right-handed 310
Helix 47	AF2	B	184	189	Right-handed alpha
Helix 48	AF3	B	275	281	Right-handed alpha

There are 15 sheets in PDB entry 9JA3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	98	100	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	94	95	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	193	199	parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	314	318	anti-parallel
Strand 7	A	350	352	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	266	273	anti-parallel
Strand 4	A	248	257	anti-parallel
Strand 5	A	634	635	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	406	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	889	893	anti-parallel
Strand 5	A	881	886	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	757	first strand
Strand 2	A	760	765	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	1143	1144	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1211	1215	first strand
Strand 2	B	166	170	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	123	128	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	157	160	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	58	61	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	75	82	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	303	anti-parallel
Strand 7	B	286	290	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	258	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JA3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JA3