Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JAE entry

There are 4 chains in PDB entry 9JAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3THR 196
B
 GLY 4THR 196
C
 SER 3ARG 195
D
 SER 3THR 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9JAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
58 68Right-handed alpha
Helix 3
AA3
A
86 95Right-handed alpha
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
127 137Right-handed alpha
Helix 6
AA6
A
142 160Right-handed alpha
Helix 7
AA7
A
174 186Right-handed alpha
Helix 8
AA8
A
186 196Right-handed alpha
Helix 9
AA9
B
18 29Right-handed alpha
Helix 10
AB1
B
58 68Right-handed alpha
Helix 11
AB2
B
86 95Right-handed alpha
Helix 12
AB3
B
104 113Right-handed alpha
Helix 13
AB4
B
127 139Right-handed alpha
Helix 14
AB5
B
142 160Right-handed alpha
Helix 15
AB6
B
174 186Right-handed alpha
Helix 16
AB7
B
186 195Right-handed alpha
Helix 17
AB8
C
17 27Right-handed alpha
Helix 18
AB9
C
58 68Right-handed alpha
Helix 19
AC1
C
86 95Right-handed alpha
Helix 20
AC2
C
104 114Right-handed alpha
Helix 21
AC3
C
127 138Right-handed alpha
Helix 22
AC4
C
144 160Right-handed alpha
Helix 23
AC5
C
174 186Right-handed alpha
Helix 24
AC6
C
187 195Right-handed alpha
Helix 25
AC7
D
17 29Right-handed alpha
Helix 26
AC8
D
58 68Right-handed alpha
Helix 27
AC9
D
86 95Right-handed alpha
Helix 28
AD1
D
104 112Right-handed alpha
Helix 29
AD2
D
127 138Right-handed alpha
Helix 30
AD3
D
142 160Right-handed alpha
Helix 31
AD4
D
174 195Right-handed alpha
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There are 8 sheets in PDB entry 9JAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
98 102parallel
Strand 3
A
8 11parallel
Strand 4
A
119 124parallel
Strand 5
A
168 171parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
39 40parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
71 77anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
98 102parallel
Strand 3
B
8 11parallel
Strand 4
B
119 124parallel
Strand 5
B
168 171parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
39 40parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
71 76anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
98 102parallel
Strand 3
C
8 11parallel
Strand 4
C
119 124parallel
Strand 5
C
168 171parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
39 40parallel
Strand 3
C
81 85anti-parallel
Strand 4
C
71 76anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 35first strand
Strand 2
D
98 102parallel
Strand 3
D
8 11parallel
Strand 4
D
119 124parallel
Strand 5
D
168 171parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
39 40parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
71 77anti-parallel
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