Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JAO entry

There are 10 chains in PDB entry 9JAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 375THR 1003
D
 LYS 37ARG 134
B
 LYS 20GLY 101
E
 ARG 40ARG 134
F
 LYS 8GLY 102
G
 ALA 12LYS 118
H
 THR 29ALA 121
I
 T 2 T 105
J
 A 43 A 146
K
 THR 1018LEU 1026
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9JAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
382 396Right-handed alpha
Helix 2
AA2
C
397 403Right-handed alpha
Helix 3
AA3
C
409 418Right-handed alpha
Helix 4
AA4
C
423 434Right-handed alpha
Helix 5
AA5
C
439 476Right-handed alpha
Helix 6
AA6
C
498 514Right-handed alpha
Helix 7
AA7
C
527 542Right-handed alpha
Helix 8
AA8
C
556 568Right-handed alpha
Helix 9
AA9
C
579 592Right-handed alpha
Helix 10
AB1
C
610 620Right-handed alpha
Helix 11
AB2
C
630 634Right-handed 310
Helix 12
AB3
C
638 646Right-handed alpha
Helix 13
AB4
C
663 675Right-handed alpha
Helix 14
AB5
C
675 680Right-handed alpha
Helix 15
AB6
C
682 690Right-handed alpha
Helix 16
AB7
C
701 716Right-handed alpha
Helix 17
AB8
C
723 728Right-handed alpha
Helix 18
AB9
C
744 761Right-handed alpha
Helix 19
AC1
C
771 774Right-handed 310
Helix 20
AC2
C
775 784Right-handed alpha
Helix 21
AC3
C
785 788Right-handed 310
Helix 22
AC4
C
793 804Right-handed alpha
Helix 23
AC5
C
805 811Right-handed 310
Helix 24
AC6
C
814 824Right-handed alpha
Helix 25
AC7
C
826 837Right-handed alpha
Helix 26
AC8
C
840 844Right-handed 310
Helix 27
AC9
C
846 851Right-handed alpha
Helix 28
AD1
C
853 869Right-handed alpha
Helix 29
AD2
C
879 893Right-handed alpha
Helix 30
AD3
C
905 907Right-handed 310
Helix 31
AD4
C
908 919Right-handed alpha
Helix 32
AD5
C
952 961Right-handed alpha
Helix 33
AD6
C
982 1002Right-handed alpha
Helix 34
AD7
D
44 57Right-handed alpha
Helix 35
AD8
D
63 79Right-handed alpha
Helix 36
AD9
D
85 114Right-handed alpha
Helix 37
AE1
D
120 131Right-handed alpha
Helix 38
AE2
B
24 29Right-handed 310
Helix 39
AE3
B
30 41Right-handed alpha
Helix 40
AE4
B
49 76Right-handed alpha
Helix 41
AE5
B
82 93Right-handed alpha
Helix 42
AE6
E
44 57Right-handed alpha
Helix 43
AE7
E
63 77Right-handed alpha
Helix 44
AE8
E
85 114Right-handed alpha
Helix 45
AE9
E
120 132Right-handed alpha
Helix 46
AF1
F
24 29Right-handed 310
Helix 47
AF2
F
30 41Right-handed alpha
Helix 48
AF3
F
49 76Right-handed alpha
Helix 49
AF4
F
82 93Right-handed alpha
Helix 50
AF5
G
16 22Right-handed alpha
Helix 51
AF6
G
27 37Right-handed alpha
Helix 52
AF7
G
46 73Right-handed alpha
Helix 53
AF8
G
79 90Right-handed alpha
Helix 54
AF9
G
90 97Right-handed alpha
Helix 55
AG1
H
34 46Right-handed alpha
Helix 56
AG2
H
52 81Right-handed alpha
Helix 57
AG3
H
87 99Right-handed alpha
Helix 58
AG4
H
101 121Right-handed alpha
Helix 59
AG5
K
1019 1025Right-handed alpha
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There are 8 sheets in PDB entry 9JAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
573 575first strand
Strand 2
C
599 603parallel
Strand 3
C
548 552parallel
Strand 4
C
624 628parallel
Strand 5
C
651 655parallel
Strand 6
C
519 520parallel
Strand 7
C
719 720parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
737 741first strand
Strand 2
C
973 979parallel
Strand 3
C
943 946parallel
Strand 4
C
873 877parallel
Strand 5
C
924 928parallel
Strand 6
C
897 900parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 84first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
85 86parallel
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