Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JAQ entry

There are 2 chains in PDB entry 9JAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 12VAL 419
B
 ILE 12VAL 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9JAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
44 51Right-handed alpha
Helix 4
AA4
A
64 74Right-handed alpha
Helix 5
AA5
A
84 100Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
114 118Right-handed 310
Helix 8
AA8
A
170 183Right-handed alpha
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
203 213Right-handed alpha
Helix 11
AB2
A
215 226Right-handed alpha
Helix 12
AB3
A
264 266Right-handed 310
Helix 13
AB4
A
293 310Right-handed alpha
Helix 14
AB5
A
325 342Right-handed alpha
Helix 15
AB6
A
346 359Right-handed alpha
Helix 16
AB7
A
362 372Right-handed alpha
Helix 17
AB8
A
388 417Right-handed alpha
Helix 18
AB9
B
14 28Right-handed alpha
Helix 19
AC1
B
35 39Right-handed 310
Helix 20
AC2
B
44 51Right-handed alpha
Helix 21
AC3
B
64 74Right-handed alpha
Helix 22
AC4
B
84 100Right-handed alpha
Helix 23
AC5
B
102 108Right-handed alpha
Helix 24
AC6
B
114 118Right-handed 310
Helix 25
AC7
B
170 183Right-handed alpha
Helix 26
AC8
B
203 213Right-handed alpha
Helix 27
AC9
B
215 226Right-handed alpha
Helix 28
AD1
B
264 266Right-handed 310
Helix 29
AD2
B
293 310Right-handed alpha
Helix 30
AD3
B
325 342Right-handed alpha
Helix 31
AD4
B
346 359Right-handed alpha
Helix 32
AD5
B
362 372Right-handed alpha
Helix 33
AD6
B
362 372Right-handed alpha
Helix 34
AD7
B
388 417Right-handed alpha
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There are 2 sheets in PDB entry 9JAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
192 194parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
241 248anti-parallel
Strand 5
A
253 257parallel
Strand 6
A
273 277anti-parallel
Strand 7
A
281 283parallel
Strand 8
A
313 317first strand
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
192 194parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
241 248anti-parallel
Strand 5
B
253 257parallel
Strand 6
B
273 277anti-parallel
Strand 7
B
281 283parallel
Strand 8
B
313 317first strand
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