Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JAV entry

There are 10 chains in PDB entry 9JAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	LEU 386
B	ASN 3	LEU 386
C	ASN 3	LEU 386
D	ASN 3	LEU 386
E	ASN 3	LEU 386
F	ASN 3	LEU 386
G	ASN 3	LEU 386
H	ASN 3	LEU 386
I	ASN 3	LEU 386
J	ASN 3	LEU 386

There are209 helices in PDB entry 9JAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	22	Right-handed 310
Helix 2	AA2	A	23	31	Right-handed alpha
Helix 3	AA3	A	41	47	Right-handed alpha
Helix 4	AA4	A	48	59	Right-handed alpha
Helix 5	AA5	A	75	89	Right-handed alpha
Helix 6	AA6	A	99	116	Right-handed alpha
Helix 7	AA7	A	118	123	Right-handed 310
Helix 8	AA8	A	145	149	Right-handed 310
Helix 9	AA9	A	168	171	Right-handed 310
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	186	207	Right-handed alpha
Helix 12	AB3	A	211	235	Right-handed alpha
Helix 13	AB4	A	238	260	Right-handed alpha
Helix 14	AB5	A	262	276	Right-handed alpha
Helix 15	AB6	A	278	295	Right-handed alpha
Helix 16	AB7	A	298	309	Right-handed alpha
Helix 17	AB8	A	317	336	Right-handed alpha
Helix 18	AB9	A	342	346	Right-handed 310
Helix 19	AC1	A	348	350	Right-handed 310
Helix 20	AC2	A	351	360	Right-handed alpha
Helix 21	AC3	A	361	368	Right-handed 310
Helix 22	AC4	A	373	386	Right-handed alpha
Helix 23	AC5	B	19	22	Right-handed 310
Helix 24	AC6	B	23	30	Right-handed alpha
Helix 25	AC7	B	42	47	Right-handed alpha
Helix 26	AC8	B	48	60	Right-handed alpha
Helix 27	AC9	B	75	89	Right-handed alpha
Helix 28	AD1	B	99	116	Right-handed alpha
Helix 29	AD2	B	118	123	Right-handed 310
Helix 30	AD3	B	168	171	Right-handed 310
Helix 31	AD4	B	179	183	Right-handed 310
Helix 32	AD5	B	186	207	Right-handed alpha
Helix 33	AD6	B	211	235	Right-handed alpha
Helix 34	AD7	B	238	260	Right-handed alpha
Helix 35	AD8	B	262	276	Right-handed alpha
Helix 36	AD9	B	278	295	Right-handed alpha
Helix 37	AE1	B	298	309	Right-handed alpha
Helix 38	AE2	B	317	336	Right-handed alpha
Helix 39	AE3	B	342	346	Right-handed 310
Helix 40	AE4	B	348	350	Right-handed 310
Helix 41	AE5	B	351	360	Right-handed alpha
Helix 42	AE6	B	361	368	Right-handed 310
Helix 43	AE7	B	373	384	Right-handed alpha
Helix 44	AE8	C	19	22	Right-handed 310
Helix 45	AE9	C	23	31	Right-handed alpha
Helix 46	AF1	C	42	48	Right-handed alpha
Helix 47	AF2	C	48	59	Right-handed alpha
Helix 48	AF3	C	75	89	Right-handed alpha
Helix 49	AF4	C	99	116	Right-handed alpha
Helix 50	AF5	C	118	123	Right-handed 310
Helix 51	AF6	C	168	171	Right-handed 310
Helix 52	AF7	C	179	183	Right-handed 310
Helix 53	AF8	C	186	207	Right-handed alpha
Helix 54	AF9	C	211	235	Right-handed alpha
Helix 55	AG1	C	238	260	Right-handed alpha
Helix 56	AG2	C	262	276	Right-handed alpha
Helix 57	AG3	C	278	295	Right-handed alpha
Helix 58	AG4	C	298	309	Right-handed alpha
Helix 59	AG5	C	317	336	Right-handed alpha
Helix 60	AG6	C	348	350	Right-handed 310
Helix 61	AG7	C	351	362	Right-handed alpha
Helix 62	AG8	C	363	368	Right-handed 310
Helix 63	AG9	C	373	386	Right-handed alpha
Helix 64	AH1	D	19	22	Right-handed 310
Helix 65	AH2	D	23	31	Right-handed alpha
Helix 66	AH3	D	42	47	Right-handed alpha
Helix 67	AH4	D	48	60	Right-handed alpha
Helix 68	AH5	D	75	89	Right-handed alpha
Helix 69	AH6	D	99	113	Right-handed alpha
Helix 70	AH7	D	118	123	Right-handed 310
Helix 71	AH8	D	167	171	Right-handed 310
Helix 72	AH9	D	178	183	Right-handed 310
Helix 73	AI1	D	186	207	Right-handed alpha
Helix 74	AI2	D	211	235	Right-handed alpha
Helix 75	AI3	D	238	260	Right-handed alpha
Helix 76	AI4	D	262	276	Right-handed alpha
Helix 77	AI5	D	278	295	Right-handed alpha
Helix 78	AI6	D	298	309	Right-handed alpha
Helix 79	AI7	D	317	336	Right-handed alpha
Helix 80	AI8	D	342	346	Right-handed 310
Helix 81	AI9	D	348	350	Right-handed 310
Helix 82	AJ1	D	351	361	Right-handed alpha
Helix 83	AJ2	D	362	368	Right-handed 310
Helix 84	AJ3	D	373	384	Right-handed alpha
Helix 85	AJ4	E	19	22	Right-handed 310
Helix 86	AJ5	E	23	32	Right-handed alpha
Helix 87	AJ6	E	41	46	Right-handed alpha
Helix 88	AJ7	E	48	59	Right-handed alpha
Helix 89	AJ8	E	75	89	Right-handed alpha
Helix 90	AJ9	E	99	113	Right-handed alpha
Helix 91	AK1	E	157	160	Right-handed 310
Helix 92	AK2	E	179	183	Right-handed 310
Helix 93	AK3	E	186	207	Right-handed alpha
Helix 94	AK4	E	211	235	Right-handed alpha
Helix 95	AK5	E	238	260	Right-handed alpha
Helix 96	AK6	E	262	275	Right-handed alpha
Helix 97	AK7	E	278	295	Right-handed alpha
Helix 98	AK8	E	298	309	Right-handed alpha
Helix 99	AK9	E	317	336	Right-handed alpha
Helix 100	AL1	E	342	346	Right-handed 310
Helix 101	AL2	E	348	350	Right-handed 310
Helix 102	AL3	E	351	360	Right-handed alpha
Helix 103	AL4	E	361	368	Right-handed 310
Helix 104	AL5	E	373	384	Right-handed alpha
Helix 105	AL6	F	19	22	Right-handed 310
Helix 106	AL7	F	23	30	Right-handed alpha
Helix 107	AL8	F	42	47	Right-handed alpha
Helix 108	AL9	F	48	59	Right-handed alpha
Helix 109	AM1	F	75	89	Right-handed alpha
Helix 110	AM2	F	99	116	Right-handed alpha
Helix 111	AM3	F	118	123	Right-handed 310
Helix 112	AM4	F	168	171	Right-handed 310
Helix 113	AM5	F	179	183	Right-handed 310
Helix 114	AM6	F	186	207	Right-handed alpha
Helix 115	AM7	F	211	235	Right-handed alpha
Helix 116	AM8	F	238	260	Right-handed alpha
Helix 117	AM9	F	262	276	Right-handed alpha
Helix 118	AN1	F	278	295	Right-handed alpha
Helix 119	AN2	F	298	309	Right-handed alpha
Helix 120	AN3	F	317	336	Right-handed alpha
Helix 121	AN4	F	342	346	Right-handed 310
Helix 122	AN5	F	348	350	Right-handed 310
Helix 123	AN6	F	351	360	Right-handed alpha
Helix 124	AN7	F	361	368	Right-handed 310
Helix 125	AN8	F	373	384	Right-handed alpha
Helix 126	AN9	G	19	22	Right-handed 310
Helix 127	AO1	G	23	32	Right-handed alpha
Helix 128	AO2	G	42	47	Right-handed alpha
Helix 129	AO3	G	48	59	Right-handed alpha
Helix 130	AO4	G	75	89	Right-handed alpha
Helix 131	AO5	G	99	116	Right-handed alpha
Helix 132	AO6	G	168	171	Right-handed 310
Helix 133	AO7	G	178	183	Right-handed alpha
Helix 134	AO8	G	186	207	Right-handed alpha
Helix 135	AO9	G	211	235	Right-handed alpha
Helix 136	AP1	G	238	260	Right-handed alpha
Helix 137	AP2	G	262	276	Right-handed alpha
Helix 138	AP3	G	278	295	Right-handed alpha
Helix 139	AP4	G	298	309	Right-handed alpha
Helix 140	AP5	G	317	336	Right-handed alpha
Helix 141	AP6	G	342	346	Right-handed 310
Helix 142	AP7	G	348	350	Right-handed 310
Helix 143	AP8	G	351	362	Right-handed alpha
Helix 144	AP9	G	363	368	Right-handed 310
Helix 145	AQ1	G	373	384	Right-handed alpha
Helix 146	AQ2	H	19	22	Right-handed 310
Helix 147	AQ3	H	23	31	Right-handed alpha
Helix 148	AQ4	H	42	47	Right-handed alpha
Helix 149	AQ5	H	48	60	Right-handed alpha
Helix 150	AQ6	H	75	88	Right-handed alpha
Helix 151	AQ7	H	99	113	Right-handed alpha
Helix 152	AQ8	H	118	122	Right-handed 310
Helix 153	AQ9	H	145	149	Right-handed 310
Helix 154	AR1	H	168	171	Right-handed 310
Helix 155	AR2	H	179	183	Right-handed 310
Helix 156	AR3	H	186	207	Right-handed alpha
Helix 157	AR4	H	211	235	Right-handed alpha
Helix 158	AR5	H	238	260	Right-handed alpha
Helix 159	AR6	H	262	276	Right-handed alpha
Helix 160	AR7	H	278	295	Right-handed alpha
Helix 161	AR8	H	298	309	Right-handed alpha
Helix 162	AR9	H	317	336	Right-handed alpha
Helix 163	AS1	H	351	362	Right-handed alpha
Helix 164	AS2	H	363	367	Right-handed 310
Helix 165	AS3	H	373	384	Right-handed alpha
Helix 166	AS4	I	19	22	Right-handed 310
Helix 167	AS5	I	23	32	Right-handed alpha
Helix 168	AS6	I	42	48	Right-handed alpha
Helix 169	AS7	I	48	59	Right-handed alpha
Helix 170	AS8	I	75	89	Right-handed alpha
Helix 171	AS9	I	99	116	Right-handed alpha
Helix 172	AT1	I	118	123	Right-handed 310
Helix 173	AT2	I	145	149	Right-handed 310
Helix 174	AT3	I	168	171	Right-handed 310
Helix 175	AT4	I	179	183	Right-handed 310
Helix 176	AT5	I	186	207	Right-handed alpha
Helix 177	AT6	I	211	235	Right-handed alpha
Helix 178	AT7	I	238	260	Right-handed alpha
Helix 179	AT8	I	262	276	Right-handed alpha
Helix 180	AT9	I	278	295	Right-handed alpha
Helix 181	AU1	I	298	309	Right-handed alpha
Helix 182	AU2	I	317	336	Right-handed alpha
Helix 183	AU3	I	342	346	Right-handed 310
Helix 184	AU4	I	351	360	Right-handed alpha
Helix 185	AU5	I	361	362	Right-handed 310
Helix 186	AU6	I	363	368	Right-handed 310
Helix 187	AU7	I	373	384	Right-handed alpha
Helix 188	AU8	J	19	22	Right-handed 310
Helix 189	AU9	J	23	32	Right-handed alpha
Helix 190	AV1	J	42	47	Right-handed alpha
Helix 191	AV2	J	48	59	Right-handed alpha
Helix 192	AV3	J	75	88	Right-handed alpha
Helix 193	AV4	J	99	113	Right-handed alpha
Helix 194	AV5	J	118	123	Right-handed 310
Helix 195	AV6	J	145	149	Right-handed 310
Helix 196	AV7	J	167	171	Right-handed 310
Helix 197	AV8	J	178	183	Right-handed alpha
Helix 198	AV9	J	186	207	Right-handed alpha
Helix 199	AW1	J	211	235	Right-handed alpha
Helix 200	AW2	J	238	260	Right-handed alpha
Helix 201	AW3	J	262	276	Right-handed alpha
Helix 202	AW4	J	278	295	Right-handed alpha
Helix 203	AW5	J	298	309	Right-handed alpha
Helix 204	AW6	J	317	336	Right-handed alpha
Helix 205	AW7	J	342	346	Right-handed 310
Helix 206	AW8	J	348	350	Right-handed 310
Helix 207	AW9	J	351	360	Right-handed alpha
Helix 208	AX1	J	361	368	Right-handed 310
Helix 209	AX2	J	373	384	Right-handed alpha

There are 20 sheets in PDB entry 9JAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	B	13	16	anti-parallel
Strand 3	B	174	177	parallel
Strand 4	B	135	139	parallel
Strand 5	B	93	98	parallel
Strand 6	B	35	41	parallel
Strand 7	B	63	70	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	35	39	parallel
Strand 3	A	93	98	parallel
Strand 4	A	135	139	parallel
Strand 5	A	174	177	parallel
Strand 6	A	13	16	parallel
Strand 7	B	6	9	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	161	166	parallel
Strand 3	A	151	156	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	161	166	parallel
Strand 3	B	151	156	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	D	13	16	anti-parallel
Strand 3	D	174	177	parallel
Strand 4	D	135	139	parallel
Strand 5	D	93	98	parallel
Strand 6	D	35	41	parallel
Strand 7	D	63	70	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	70	first strand
Strand 2	C	35	41	parallel
Strand 3	C	93	98	parallel
Strand 4	C	135	139	parallel
Strand 5	C	174	177	parallel
Strand 6	C	13	16	parallel
Strand 7	D	6	9	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	161	166	parallel
Strand 3	C	151	156	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	161	166	parallel
Strand 3	D	153	156	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	9	first strand
Strand 2	F	13	16	anti-parallel
Strand 3	F	174	177	parallel
Strand 4	F	135	139	parallel
Strand 5	F	93	98	parallel
Strand 6	F	35	41	parallel
Strand 7	F	63	70	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	35	39	parallel
Strand 3	E	93	98	parallel
Strand 4	E	135	139	parallel
Strand 5	E	174	177	parallel
Strand 6	E	13	16	parallel
Strand 7	F	6	9	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	161	166	parallel
Strand 3	E	151	156	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	161	166	parallel
Strand 3	F	151	156	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	9	first strand
Strand 2	H	13	16	anti-parallel
Strand 3	H	174	177	parallel
Strand 4	H	135	139	parallel
Strand 5	H	93	98	parallel
Strand 6	H	35	41	parallel
Strand 7	H	63	70	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	70	first strand
Strand 2	G	35	41	parallel
Strand 3	G	93	98	parallel
Strand 4	G	135	139	parallel
Strand 5	G	174	177	parallel
Strand 6	G	13	16	parallel
Strand 7	H	6	9	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	125	first strand
Strand 2	G	161	166	parallel
Strand 3	G	151	156	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	155	first strand
Strand 2	H	162	166	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	9	first strand
Strand 2	J	13	16	anti-parallel
Strand 3	J	174	177	parallel
Strand 4	J	135	139	parallel
Strand 5	J	93	98	parallel
Strand 6	J	35	41	parallel
Strand 7	J	63	70	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	70	first strand
Strand 2	I	35	41	parallel
Strand 3	I	93	98	parallel
Strand 4	I	135	139	parallel
Strand 5	I	174	177	parallel
Strand 6	I	13	17	parallel
Strand 7	J	5	9	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	125	first strand
Strand 2	I	161	166	parallel
Strand 3	I	151	156	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	125	first strand
Strand 2	J	161	166	parallel
Strand 3	J	153	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAV