Analysis of interatomic Contacts of Structural Units in PDB entry:
9JAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JAX entry

There are 4 chains in PDB entry 9JAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 2GLU 187
A
 LEU 4GLU 187
B
 GLY 2GLU 187
C
 LEU 4GLU 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9JAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
66 69Right-handed 310
Helix 2
AA2
E
85 99Right-handed alpha
Helix 3
AA3
E
151 161Right-handed alpha
Helix 4
AA4
E
166 184Right-handed alpha
Helix 5
AA5
A
66 69Right-handed 310
Helix 6
AA6
A
85 99Right-handed alpha
Helix 7
AA7
A
151 161Right-handed alpha
Helix 8
AA8
A
166 184Right-handed alpha
Helix 9
AA9
B
66 69Right-handed 310
Helix 10
AB1
B
85 99Right-handed alpha
Helix 11
AB2
B
151 161Right-handed alpha
Helix 12
AB3
B
166 187Right-handed alpha
Helix 13
AB4
C
66 69Right-handed 310
Helix 14
AB5
C
85 99Right-handed alpha
Helix 15
AB6
C
151 161Right-handed alpha
Helix 16
AB7
C
166 181Right-handed alpha
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There are 13 sheets in PDB entry 9JAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 17first strand
Strand 2
E
22 29anti-parallel
Strand 3
E
35 42anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 79first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
121 132parallel
Strand 4
E
100 112anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 74first strand
Strand 2
E
58 65anti-parallel
Strand 3
E
147 150anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 17first strand
Strand 2
A
22 29anti-parallel
Strand 3
A
35 42anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
121 128parallel
Strand 4
A
104 112anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
58 65anti-parallel
Strand 3
A
146 150anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
131 132anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 17first strand
Strand 2
B
22 29anti-parallel
Strand 3
B
35 42anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
121 128parallel
Strand 4
B
104 112anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
147 150anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 17first strand
Strand 2
C
22 29anti-parallel
Strand 3
C
35 42anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
121 132parallel
Strand 4
C
100 112anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
58 65anti-parallel
Strand 3
C
147 150anti-parallel
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