Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JBF entry

There are 2 chains in PDB entry 9JBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34GLN 835
B
 PRO 34GLN 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9JBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 40Right-handed 310
Helix 2
AA2
A
41 62Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
80 92Right-handed alpha
Helix 5
AA5
A
99 124Right-handed alpha
Helix 6
AA6
A
129 136Right-handed alpha
Helix 7
AA7
A
136 141Right-handed alpha
Helix 8
AA8
A
150 158Right-handed alpha
Helix 9
AA9
A
162 167Right-handed 310
Helix 10
AB1
A
168 180Right-handed alpha
Helix 11
AB2
A
180 197Right-handed alpha
Helix 12
AB3
A
202 216Right-handed alpha
Helix 13
AB4
A
217 233Right-handed alpha
Helix 14
AB5
A
238 251Right-handed alpha
Helix 15
AB6
A
252 264Right-handed alpha
Helix 16
AB7
A
272 288Right-handed alpha
Helix 17
AB8
A
288 302Right-handed alpha
Helix 18
AB9
A
306 322Right-handed alpha
Helix 19
AC1
A
327 337Right-handed alpha
Helix 20
AC2
A
339 367Right-handed alpha
Helix 21
AC3
A
368 370Right-handed 310
Helix 22
AC4
A
371 405Right-handed alpha
Helix 23
AC5
A
409 434Right-handed alpha
Helix 24
AC6
A
439 474Right-handed alpha
Helix 25
AC7
A
480 502Right-handed alpha
Helix 26
AC8
A
511 515Right-handed 310
Helix 27
AC9
A
517 542Right-handed alpha
Helix 28
AD1
A
638 651Right-handed alpha
Helix 29
AD2
A
654 682Right-handed alpha
Helix 30
AD3
A
688 711Right-handed alpha
Helix 31
AD4
A
745 758Right-handed alpha
Helix 32
AD5
A
762 767Right-handed alpha
Helix 33
AD6
A
783 794Right-handed alpha
Helix 34
AD7
A
798 812Right-handed alpha
Helix 35
AD8
B
38 40Right-handed 310
Helix 36
AD9
B
41 62Right-handed alpha
Helix 37
AE1
B
66 80Right-handed alpha
Helix 38
AE2
B
80 92Right-handed alpha
Helix 39
AE3
B
99 124Right-handed alpha
Helix 40
AE4
B
129 141Right-handed alpha
Helix 41
AE5
B
150 158Right-handed alpha
Helix 42
AE6
B
162 166Right-handed 310
Helix 43
AE7
B
167 196Right-handed alpha
Helix 44
AE8
B
203 216Right-handed alpha
Helix 45
AE9
B
217 233Right-handed alpha
Helix 46
AF1
B
238 250Right-handed alpha
Helix 47
AF2
B
252 264Right-handed alpha
Helix 48
AF3
B
272 288Right-handed alpha
Helix 49
AF4
B
288 302Right-handed alpha
Helix 50
AF5
B
306 322Right-handed alpha
Helix 51
AF6
B
327 337Right-handed alpha
Helix 52
AF7
B
339 366Right-handed alpha
Helix 53
AF8
B
367 370Right-handed 310
Helix 54
AF9
B
371 404Right-handed alpha
Helix 55
AG1
B
409 434Right-handed alpha
Helix 56
AG2
B
439 473Right-handed alpha
Helix 57
AG3
B
480 502Right-handed alpha
Helix 58
AG4
B
511 515Right-handed 310
Helix 59
AG5
B
517 541Right-handed alpha
Helix 60
AG6
B
634 638Right-handed 310
Helix 61
AG7
B
639 651Right-handed alpha
Helix 62
AG8
B
654 682Right-handed alpha
Helix 63
AG9
B
688 701Right-handed alpha
Helix 64
AH1
B
702 711Right-handed alpha
Helix 65
AH2
B
745 758Right-handed alpha
Helix 66
AH3
B
758 764Right-handed alpha
Helix 67
AH4
B
783 794Right-handed alpha
Helix 68
AH5
B
798 812Right-handed alpha
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There are 2 sheets in PDB entry 9JBF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 782first strand
Strand 2
A
830 832anti-parallel
Strand 3
A
816 817anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
781 782first strand
Strand 2
B
830 832anti-parallel
Strand 3
B
816 817anti-parallel
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