Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JBM entry

There are 2 chains in PDB entry 9JBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 36PRO 1198
B
 UNK 1UNK 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9JBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
73 84Right-handed alpha
Helix 4
AA4
A
99 121Right-handed alpha
Helix 5
AA5
A
121 129Right-handed alpha
Helix 6
AA6
A
201 206Right-handed alpha
Helix 7
AA7
A
212 223Right-handed alpha
Helix 8
AA8
A
233 243Right-handed alpha
Helix 9
AA9
A
244 260Right-handed alpha
Helix 10
AB1
A
262 295Right-handed alpha
Helix 11
AB2
A
315 317Right-handed 310
Helix 12
AB3
A
349 354Right-handed alpha
Helix 13
AB4
A
363 367Right-handed 310
Helix 14
AB5
A
374 379Right-handed alpha
Helix 15
AB6
A
417 420Right-handed 310
Helix 16
AB7
A
421 432Right-handed alpha
Helix 17
AB8
A
441 469Right-handed alpha
Helix 18
AB9
A
473 489Right-handed alpha
Helix 19
AC1
A
491 510Right-handed alpha
Helix 20
AC2
A
517 519Right-handed 310
Helix 21
AC3
A
520 527Right-handed alpha
Helix 22
AC4
A
559 563Right-handed 310
Helix 23
AC5
A
564 574Right-handed alpha
Helix 24
AC6
A
588 599Right-handed alpha
Helix 25
AC7
A
656 663Right-handed alpha
Helix 26
AC8
A
670 681Right-handed alpha
Helix 27
AC9
A
697 708Right-handed alpha
Helix 28
AD1
A
728 739Right-handed alpha
Helix 29
AD2
A
750 761Right-handed alpha
Helix 30
AD3
A
799 807Right-handed alpha
Helix 31
AD4
A
813 823Right-handed alpha
Helix 32
AD5
A
823 831Right-handed alpha
Helix 33
AD6
A
832 834Right-handed 310
Helix 34
AD7
A
841 855Right-handed alpha
Helix 35
AD8
A
865 867Right-handed 310
Helix 36
AD9
A
868 875Right-handed alpha
Helix 37
AE1
A
952 958Right-handed alpha
Helix 38
AE2
A
967 1009Right-handed alpha
Helix 39
AE3
A
1013 1033Right-handed alpha
Helix 40
AE4
A
1051 1080Right-handed alpha
Helix 41
AE5
A
1097 1119Right-handed alpha
Helix 42
AE6
A
1131 1150Right-handed alpha
Helix 43
AE7
A
1153 1160Right-handed alpha
Helix 44
AE8
A
1166 1196Right-handed alpha
Helix 45
AE9
B
2 22Right-handed alpha
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There are 8 sheets in PDB entry 9JBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
50 58anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
154 162anti-parallel
Strand 5
A
168 174anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
188 191anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 305first strand
Strand 2
A
308 313anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
410 416anti-parallel
Strand 3
A
337 342anti-parallel
Strand 4
A
383 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
389 394anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
960 962anti-parallel
Strand 3
A
877 881parallel
Strand 4
A
859 863parallel
Strand 5
A
529 532parallel
Strand 6
A
742 746parallel
Strand 7
A
836 838parallel
Strand 8
A
808 812parallel
Strand 9
A
769 773parallel
Strand 10
A
783 786anti-parallel
Strand 11
A
792 794anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 549first strand
Strand 2
A
713 722anti-parallel
Strand 3
A
684 694anti-parallel
Strand 4
A
647 655anti-parallel
Strand 5
A
632 640anti-parallel
Strand 6
A
618 627anti-parallel
Strand 7
A
607 610anti-parallel
Strand 8
A
600 602anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 549first strand
Strand 2
A
713 722anti-parallel
Strand 3
A
664 666parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
585 586anti-parallel
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