Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JBN entry

There are 3 chains in PDB entry 9JBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 616
B
 CYS 4TYR 525
C
 ASP 389ASP 811
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 9JBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
10 24Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
87 97Right-handed alpha
Helix 5
AA5
A
98 101Right-handed 310
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
123 140Right-handed alpha
Helix 8
AA8
A
163 173Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
196 201Right-handed alpha
Helix 12
AB3
A
203 212Right-handed alpha
Helix 13
AB4
A
221 248Right-handed alpha
Helix 14
AB5
A
251 260Right-handed alpha
Helix 15
AB6
A
286 297Right-handed alpha
Helix 16
AB7
A
304 307Right-handed 310
Helix 17
AB8
A
308 316Right-handed alpha
Helix 18
AB9
A
319 327Right-handed alpha
Helix 19
AC1
A
328 330Right-handed 310
Helix 20
AC2
A
341 348Right-handed alpha
Helix 21
AC3
A
351 380Right-handed alpha
Helix 22
AC4
A
381 394Right-handed alpha
Helix 23
AC5
A
394 402Right-handed alpha
Helix 24
AC6
A
405 413Right-handed alpha
Helix 25
AC7
A
415 441Right-handed alpha
Helix 26
AC8
A
447 450Right-handed 310
Helix 27
AC9
A
451 476Right-handed alpha
Helix 28
AD1
A
478 483Right-handed alpha
Helix 29
AD2
A
484 489Right-handed alpha
Helix 30
AD3
A
491 507Right-handed alpha
Helix 31
AD4
A
508 510Right-handed 310
Helix 32
AD5
A
512 523Right-handed alpha
Helix 33
AD6
A
529 537Right-handed alpha
Helix 34
AD7
A
544 546Right-handed 310
Helix 35
AD8
A
547 556Right-handed alpha
Helix 36
AD9
A
559 580Right-handed alpha
Helix 37
AE1
A
593 600Right-handed alpha
Helix 38
AE2
A
603 609Right-handed alpha
Helix 39
AE3
B
8 18Right-handed alpha
Helix 40
AE4
B
19 36Right-handed alpha
Helix 41
AE5
B
87 97Right-handed alpha
Helix 42
AE6
B
97 106Right-handed alpha
Helix 43
AE7
B
118 133Right-handed alpha
Helix 44
AE8
B
154 164Right-handed alpha
Helix 45
AE9
B
166 168Right-handed 310
Helix 46
AF1
B
179 183Right-handed 310
Helix 47
AF2
B
207 221Right-handed alpha
Helix 48
AF3
B
225 230Right-handed 310
Helix 49
AF4
B
231 242Right-handed alpha
Helix 50
AF5
B
243 245Right-handed 310
Helix 51
AF6
B
257 270Right-handed alpha
Helix 52
AF7
B
276 290Right-handed alpha
Helix 53
AF8
B
295 326Right-handed alpha
Helix 54
AF9
B
332 340Right-handed alpha
Helix 55
AG1
B
342 368Right-handed alpha
Helix 56
AG2
B
374 377Right-handed 310
Helix 57
AG3
B
378 403Right-handed alpha
Helix 58
AG4
B
418 428Right-handed alpha
Helix 59
AG5
B
450 467Right-handed alpha
Helix 60
AG6
B
471 495Right-handed alpha
Helix 61
AG7
B
499 504Right-handed 310
Helix 62
AG8
B
507 524Right-handed alpha
Helix 63
AG9
C
390 405Right-handed alpha
Helix 64
AH1
C
408 418Right-handed alpha
Helix 65
AH2
C
419 421Right-handed 310
Helix 66
AH3
C
429 441Right-handed alpha
Helix 67
AH4
C
443 457Right-handed alpha
Helix 68
AH5
C
483 495Right-handed alpha
Helix 69
AH6
C
515 521Right-handed alpha
Helix 70
AH7
C
539 543Right-handed 310
Helix 71
AH8
C
566 572Right-handed 310
Helix 72
AH9
C
592 599Right-handed 310
Helix 73
AI1
C
645 650Right-handed alpha
Helix 74
AI2
C
668 674Right-handed 310
Helix 75
AI3
C
694 698Right-handed 310
Helix 76
AI4
C
716 722Right-handed 310
Helix 77
AI5
C
742 746Right-handed 310
Helix 78
AI6
C
763 769Right-handed 310
Helix 79
AI7
C
778 784Right-handed 310
Helix 80
AI8
C
785 792Right-handed alpha
Helix 81
AI9
C
806 810Right-handed 310
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There are 7 sheets in PDB entry 9JBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
116 122parallel
Strand 4
A
152 156parallel
Strand 5
A
179 184parallel
Strand 6
A
272 276parallel
Strand 7
A
280 284anti-parallel
Strand 8
A
331 334parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
84 86anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
111 117parallel
Strand 4
B
141 147parallel
Strand 5
B
170 175parallel
Strand 6
B
193 197parallel
Strand 7
B
202 205anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
84 86anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
427 428first strand
Strand 2
C
479 481anti-parallel
Strand 3
C
461 462anti-parallel
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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 506first strand
Strand 2
C
530 534parallel
Strand 3
C
553 558parallel
Strand 4
C
577 582parallel
Strand 5
C
604 608parallel
Strand 6
C
627 631parallel
Strand 7
C
655 659parallel
Strand 8
C
679 683parallel
Strand 9
C
703 705parallel
Strand 10
C
727 729parallel
Strand 11
C
751 753parallel
Strand 12
C
774 777parallel
Strand 13
C
796 799parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
562 564first strand
Strand 2
C
589 591parallel
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