Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JBR entry

There is 1 chain in PDB entry 9JBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 118GLY 1196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9JBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 120Right-handed 310
Helix 2
AA2
A
121 130Right-handed alpha
Helix 3
AA3
A
194 198Right-handed 310
Helix 4
AA4
A
199 206Right-handed alpha
Helix 5
AA5
A
212 223Right-handed alpha
Helix 6
AA6
A
233 243Right-handed alpha
Helix 7
AA7
A
244 260Right-handed alpha
Helix 8
AA8
A
262 286Right-handed alpha
Helix 9
AA9
A
286 294Right-handed alpha
Helix 10
AB1
A
349 354Right-handed alpha
Helix 11
AB2
A
374 382Right-handed alpha
Helix 12
AB3
A
417 420Right-handed 310
Helix 13
AB4
A
421 432Right-handed alpha
Helix 14
AB5
A
441 468Right-handed alpha
Helix 15
AB6
A
473 489Right-handed alpha
Helix 16
AB7
A
492 511Right-handed alpha
Helix 17
AB8
A
517 519Right-handed 310
Helix 18
AB9
A
520 525Right-handed alpha
Helix 19
AC1
A
564 574Right-handed alpha
Helix 20
AC2
A
588 599Right-handed alpha
Helix 21
AC3
A
656 661Right-handed alpha
Helix 22
AC4
A
670 681Right-handed alpha
Helix 23
AC5
A
698 704Right-handed alpha
Helix 24
AC6
A
705 709Right-handed 310
Helix 25
AC7
A
727 738Right-handed alpha
Helix 26
AC8
A
750 761Right-handed alpha
Helix 27
AC9
A
800 807Right-handed alpha
Helix 28
AD1
A
813 823Right-handed alpha
Helix 29
AD2
A
823 831Right-handed alpha
Helix 30
AD3
A
832 834Right-handed 310
Helix 31
AD4
A
841 855Right-handed alpha
Helix 32
AD5
A
865 873Right-handed alpha
Helix 33
AD6
A
968 1008Right-handed alpha
Helix 34
AD7
A
1013 1033Right-handed alpha
Helix 35
AD8
A
1051 1079Right-handed alpha
Helix 36
AD9
A
1097 1118Right-handed alpha
Helix 37
AE1
A
1127 1130Right-handed 310
Helix 38
AE2
A
1131 1151Right-handed alpha
Helix 39
AE3
A
1153 1161Right-handed alpha
Helix 40
AE4
A
1166 1195Right-handed alpha
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There are 7 sheets in PDB entry 9JBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
155 156anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
169 174anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
188 191anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 313first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
322 324anti-parallel
Strand 4
A
411 414anti-parallel
Strand 5
A
338 340anti-parallel
Strand 6
A
383 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
389 394anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
960 962anti-parallel
Strand 3
A
877 881parallel
Strand 4
A
859 863parallel
Strand 5
A
529 533parallel
Strand 6
A
743 746parallel
Strand 7
A
836 838parallel
Strand 8
A
808 812parallel
Strand 9
A
769 773parallel
Strand 10
A
783 786anti-parallel
Strand 11
A
792 794anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 549first strand
Strand 2
A
718 722anti-parallel
Strand 3
A
684 691anti-parallel
Strand 4
A
647 655anti-parallel
Strand 5
A
632 640anti-parallel
Strand 6
A
618 623anti-parallel
Strand 7
A
607 609anti-parallel
Strand 8
A
601 602anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 666first strand
Strand 2
A
713 714parallel
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