Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JBV entry

There is 1 chain in PDB entry 9JBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	TYR 1457

There are 21 helices in PDB entry 9JBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	143	Right-handed alpha
Helix 2	AA2	A	160	164	Right-handed 310
Helix 3	AA3	A	183	189	Right-handed alpha
Helix 4	AA4	A	201	209	Right-handed alpha
Helix 5	AA5	A	230	234	Right-handed 310
Helix 6	AA6	A	331	336	Right-handed alpha
Helix 7	AA7	A	425	431	Right-handed alpha
Helix 8	AA8	A	559	564	Right-handed alpha
Helix 9	AA9	A	601	603	Right-handed 310
Helix 10	AB1	A	606	614	Right-handed alpha
Helix 11	AB2	A	616	620	Right-handed 310
Helix 12	AB3	A	624	631	Right-handed alpha
Helix 13	AB4	A	713	720	Right-handed alpha
Helix 14	AB5	A	878	882	Right-handed 310
Helix 15	AB6	A	917	923	Right-handed 310
Helix 16	AB7	A	967	975	Right-handed alpha
Helix 17	AB8	A	1011	1013	Right-handed 310
Helix 18	AB9	A	1015	1024	Right-handed alpha
Helix 19	AC1	A	1034	1041	Right-handed alpha
Helix 20	AC2	A	1128	1134	Right-handed alpha
Helix 21	AC3	A	1329	1333	Right-handed 310

There are 25 sheets in PDB entry 9JBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	102	109	parallel
Strand 3	A	27	33	parallel
Strand 4	A	65	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	102	109	parallel
Strand 3	A	152	156	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	194	198	parallel
Strand 3	A	172	175	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	177	178	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	219	first strand
Strand 2	A	270	279	parallel
Strand 3	A	312	319	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	286	290	anti-parallel
Strand 3	A	323	329	anti-parallel
Strand 4	A	340	345	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	300	302	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	450	first strand
Strand 2	A	403	413	anti-parallel
Strand 3	A	479	485	parallel
Strand 4	A	529	533	anti-parallel
Strand 5	A	502	503	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	567	573	parallel
Strand 3	A	547	553	anti-parallel
Strand 4	A	495	496	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	636	first strand
Strand 2	A	590	599	anti-parallel
Strand 3	A	652	660	parallel
Strand 4	A	693	701	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	722	728	parallel
Strand 3	A	706	711	anti-parallel
Strand 4	A	668	671	anti-parallel
Strand 5	A	687	689	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	679	first strand
Strand 2	A	682	684	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	862	first strand
Strand 2	A	822	832	anti-parallel
Strand 3	A	896	901	parallel
Strand 4	A	937	942	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	912	first strand
Strand 2	A	962	963	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	958	first strand
Strand 2	A	982	983	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1042	1046	first strand
Strand 2	A	999	1009	anti-parallel
Strand 3	A	1065	1071	parallel
Strand 4	A	1107	1110	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1058	1060	first strand
Strand 2	A	1136	1142	parallel
Strand 3	A	1119	1125	anti-parallel
Strand 4	A	1079	1083	anti-parallel
Strand 5	A	1100	1103	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1095	1098	first strand
Strand 2	A	1088	1091	anti-parallel
Strand 3	A	1112	1113	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1162	1164	first strand
Strand 2	A	1196	1209	anti-parallel
Strand 3	A	1263	1278	anti-parallel
Strand 4	A	1226	1231	anti-parallel
Strand 5	A	1238	1239	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1162	1164	first strand
Strand 2	A	1196	1209	anti-parallel
Strand 3	A	1291	1294	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1214	1215	first strand
Strand 2	A	1220	1221	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1397	1398	first strand
Strand 2	A	1384	1390	anti-parallel
Strand 3	A	1408	1409	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1397	1398	first strand
Strand 2	A	1384	1390	anti-parallel
Strand 3	A	1418	1437	anti-parallel
Strand 4	A	1357	1370	anti-parallel
Strand 5	A	1448	1452	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1375	first strand
Strand 2	A	1378	1380	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1400	1401	first strand
Strand 2	A	1404	1405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBV